rs246626622 SNP Detail

Summary

• ID
  rs246626622
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:30851016 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGACCCCTGC GTGTCCGCGG
  AGTCCCGTGG ACTGAGCACC AAGACTCGAC TGCAGCGCCA CAGCCCGGCC GCAAGAGTTA
  GGTCGCGGAA GTTAGGACAG ACCCAAAGCC TGGTCGGCTC CGCCAATCAG AATGTGGCGG
  GACTCTCAGA CTCTCCAATC AGAGTGCTGT TTGAGCGCGC GTGCTCTGTG AGGCTGAGTC
  R
  GTCTGAAGAA GCCTGCGCAC GCGCCTAGAT TCTGGAGACG GAGAACCTTC GGGGGGCGGG
  GTCTCCAACG TGGCGTGGCG GCCCCGCCCT CGACCTGCTC TCACTGCTGA GGCTCAGAGT
  TTACTGCCGC GCCCCCTACT CTGCCATCGC CATCTTTTTT TGTAATACCC TGACCGAGGT
  GTCGACCCTT TGTGAATGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss390696760	MGP_WTSI_14_31942245	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs246626622					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss390696760	MGP_WTSI_14_31942245	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:30851016 () rs orientation: forward

Symbol	Name	Function Class
B930019K04Rik	RIKEN cDNA B930019K04 gene	800 bp downstream
Cpgi6281	CpG island 6281	within coordinates
Cpgi6282	CpG island 6282	1379 bp proximal
Rr404046	regulatory region 404046	within coordinates
Rr489956	regulatory region 489956	1821 bp distal
Rr489957	regulatory region 489957	within coordinates
Rr489958	regulatory region 489958	144 bp proximal
Rr489959	regulatory region 489959	1504 bp proximal
Rr489960	regulatory region 489960	1836 bp proximal
Tssr124915	transcription start site region 124915	1994 bp upstream
Tssr127917	transcription start site region 127917	136 bp upstream
Tssr127918	transcription start site region 127918	99 bp upstream
Uqcc5	ubiquinol-cytochrome c reductase complex assembly factor 5	122 bp upstream