rs246626814 SNP Detail

Summary

• ID
  rs246626814
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:48653909 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCATGGAG GGGGAACTAT
  TATGGAGGCT GGAGTCCTGG TACACTCCAG TGTCCTGCTT TGACTCTGCT TTTCTCCCCC
  ACTGGCTCAT TCGTGTTCTT CACACATCCT CCCCGAGATT AATATCCACC TATAGGAAGG
  GTAACAGGGG CAGCTGGAAT TAGTCACTGA AGGAGCTGTG AGGGTGGCAC TAGTTGTGAG
  R
  TAGGGGACTC GTTAAGACAC TGCCAAGAGC CCTTAAACAC TCAAGAAGCA CTTAAACCAT
  AAGTGGAGGG GCAGAATGGG AGAGAAGAGA GAAAGACAGA CTAGGATTTG CATCTTCCTG
  GAGGTCCTCC CAGATTCGAC CTCAGCGCTC TGTGGGAGGT GAGGATGCTG TAGGCTTTAT
  CAGTGTATCC TCACCTGTAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325408102	CHEV_17_48486206	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs246626814					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48653909 () rs orientation: forward

Symbol	Name	Function Class
Gm65373	predicted gene, 65373	1662 bp downstream
Rr335233	regulatory region 335233	709 bp distal
Rr335234	regulatory region 335234	within coordinates
Trem2	triggering receptor expressed on myeloid cells 2	within coordinates
Tssr145093	transcription start site region 145093	464 bp downstream
Tssr145094	transcription start site region 145094	436 bp downstream
Tssr145095	transcription start site region 145095	388 bp downstream
Tssr145096	transcription start site region 145096	355 bp downstream
Tssr145097	transcription start site region 145097	620 bp upstream
Tssr145098	transcription start site region 145098	947 bp upstream
Tssr145099	transcription start site region 145099	1599 bp upstream
Tssr145100	transcription start site region 145100	1628 bp upstream
Tssr145101	transcription start site region 145101	1665 bp upstream
Tssr145102	transcription start site region 145102	1764 bp upstream
Tssr148525	transcription start site region 148525	1809 bp downstream