rs246629785 SNP Detail

Summary

• ID
  rs246629785
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:142947417 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGGAACTC GCTATGTAGA
  CTGGGCTGGC CCCGAACTCG CAGAAATCTT CCTTCCTGTC TCTTGTGCTG GGAATAAAGG
  CATGTACCAC CCCTCTGTTC AGGACGTAGG CTTCTTCTGC TGGGAGAAGG TGACGTGGGG
  AAGTGGGTAA GGCCTAACAC ATTCTAAAGC AATACTGTCC ACCACCACCC CCCCCCCCCC
  Y
  GGCTGGGGGC GTGGGACTCC ATAGACCTAG CTTAGATCTT CTCCGTTTCC TCTTCCTTCC
  CAGTCTGAGC CATCCCCATT CATGAGCCGA TTCTTTAGGA TAGGCTGTCC CAGGTCTTGG
  AGAGGAAGGG TTCCCCCTAC ACCCCCCCTT GTTCATTTCC TCGTGCGTCC TCTCCCGTTT
  CGCGGGCCTT TGGCTGGAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367003298	MGP_WTSI_5_143723341	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs246629785					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367003298	MGP_WTSI_5_143723341	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:142947417 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16967	CpG island 16967	138 bp distal
Cpgi16968	CpG island 16968	137 bp proximal
Fscn1	fascin actin-bundling protein 1	within coordinates
Gm72694	predicted gene, 72694	1291 bp downstream
Rr378736	regulatory region 378736	within coordinates
Rr624074	regulatory region 624074	1276 bp distal
Rr624075	regulatory region 624075	162 bp proximal
Tssr49613	transcription start site region 49613	1299 bp downstream
Tssr49614	transcription start site region 49614	1169 bp downstream
Tssr49615	transcription start site region 49615	672 bp downstream
Tssr49616	transcription start site region 49616	642 bp downstream
Tssr49617	transcription start site region 49617	462 bp downstream