rs246632312 SNP Detail

Summary

• ID
  rs246632312
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:150871001 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    agttaccta ATCAGAATTA AACGATCTAT
  ACGTGTTCCA GATGCATTTG GAGGAAAGGG AGTGGTGTTG TGTAAATTGA CTATTCAACA
  AATGTGAAAC AGATTTGTTT AATTGTGTTA AACAAATCTT AAATTAAAAT TAAATCttaa
  Y
  taagttaaat ttcctatatc attactgatt cctgcccact tgtgaccagt tattgagaat
  cgtattgaaa tataggactc tgtggatctg tcaatcttct tgaagttctg tgaggttttg
  ctttgtgcct tttgaacgtt tgtaactaag                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320052995	CHEV_1_152842380	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs246632312					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:150871001 () rs orientation: forward

Symbol	Name	Function Class
Cpgi846	CpG island 846	1457 bp distal
Gm29188	predicted gene 29188	within coordinates
Hmcn1	hemicentin 1	1815 bp upstream
Rr420193	regulatory region 420193	1709 bp distal
Rr420194	regulatory region 420194	1370 bp distal
Rr420195	regulatory region 420195	1256 bp distal
Rr420196	regulatory region 420196	214 bp distal
Tssr14168	transcription start site region 14168	1801 bp upstream