rs246641681 SNP Detail

Summary

• ID
  rs246641681
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:116900955 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGACCAGA GCAAGCTGAG
  GTCCTAAAAA TTCTATTCCC AAGAAGGCTC GCAACCATCT GTACAGCTAC AGTGTACTCA
  CATAAATAAT CTTTTAAAAA AAGAGAGAAA TGGTTAAAAC ATACATAGTC TAGGGAAAAG
  CCCCAAAACT AATGCAAAAA AAAAAAAAAA GTTTTCTCGG CGCTAGCGAG ATGGCTCAGC
  R
  GTTAAGAGCA GTGGCTGCTC TTCCTGGGGT GCAGAGTTCA ATTCCCAGAA ACTCCATGGA
  GACTCACAAC CATCTAATGC CCTCTTCTGG CATGCAGGTA TACATGCAGA TAGAGCACTC
  ATTCATATAT ATATATATAT ATATATATAT ATATATATAT ATATATATTA CATAAATCAT
  TTTTTAAAAG ATTTCTCTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323494035	CHEV_10_116502106	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs246641681					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:116900955 () rs orientation: forward

Symbol	Name	Function Class
Cct2	chaperonin containing TCP1 subunit 2	1236 bp upstream
Cpgi2223	CpG island 2223	1012 bp distal
Rr402250	regulatory region 402250	1017 bp downstream
Rr439433	regulatory region 439433	746 bp distal
Rr439434	regulatory region 439434	476 bp distal
Rr439435	regulatory region 439435	278 bp distal
Rr439436	regulatory region 439436	74 bp proximal
Rr439437	regulatory region 439437	1819 bp proximal
Tssr99381	transcription start site region 99381	1992 bp upstream
Tssr99382	transcription start site region 99382	1684 bp upstream
Tssr99383	transcription start site region 99383	1298 bp upstream
Tssr99384	transcription start site region 99384	1248 bp upstream