rs246641920 SNP Detail

Summary

• ID
  rs246641920
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:86287431 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGAGGGCGG GACTCGTTTG GGCCCAGGCG
  GACGTTGACT GGTCAGTGTG CGGGTCCTTT GAATGCTCCT GAGCGCCGGG CTCTCCCCAC
  GCCTGCGCAG TGGGACGGGC GAGTTTGGCG CGGCTTGTGT GTGAGGCGCG GGTAGGTGGC
  R
  GCGTGGCCCG GATTCCCTCA GGTGTTCCGA GGCAGCATGG GCGGCGATGC TCAGGTGGTC
  TGGGCGTTTC TCGGTGCTTT CCCCCGCGCC GCGTGGTCCT GCTGAAGAAC GCCGGAAGGC
  CTAGGGTTCC CTCGGGCTGA TGAGCGGGCC                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319828135	CHEV_1_88256284	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs246641920					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:86287431 () rs orientation: forward

Symbol	Name	Function Class
C130036L24Rik	RIKEN cDNA C130036L24 gene	within coordinates
Cpgi503	CpG island 503	within coordinates
D1Mit516	DNA Segment, Chr 1, Massachusetts Institute of Technology-516	1601 bp distal
Gm71192	predicted gene, 71192	within coordinates
Ncl	nucleolin	309 bp upstream
Rr29752	regulatory region 29752	within coordinates
Rr396146	regulatory region 396146	93 bp downstream
Tssr7749	transcription start site region 7749	119 bp downstream
Tssr7750	transcription start site region 7750	17 bp downstream
Tssr12786	transcription start site region 12786	1477 bp upstream
Tssr12787	transcription start site region 12787	1228 bp upstream
Tssr12788	transcription start site region 12788	712 bp upstream
Tssr12789	transcription start site region 12789	663 bp upstream
Tssr12790	transcription start site region 12790	328 bp upstream
Tssr12791	transcription start site region 12791	223 bp upstream
Tssr12792	transcription start site region 12792	242 bp downstream