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rs246647572 SNP Detail
Summary
  • ID
    rs246647572
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr13:98830158 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GTCTAGCCCC ATCGCCAAGG
    CGGACAGTGT CCTCAGGTAG GCGGACAGGT GGCAAGTGGC CGTCAGGCAC CCTCCTCCAC
    AGTGCCACCT ACTTCCACAG AGGCCTAGAC ACAGTAAACA GAGAGTAGTT ACAAAGCACA
    GAAGGCTAAC AAAACTTGCT GGGAAACCAA AAGTGGAACT AAGTGAAAAA GCACCTTCCA
    Y
    GAGTCGACAC AAGGTCACGG TGGCACACAC CATTAATGGG AGACAGTGGT AGGAGGATCT
    CTAAGCTTGA GGCCAGCCTG ATCTACAGAG TGAGTTCCAA GACAGCCAGA GCTACGTAAT
    AGAGAGACCC TGTCTCAAAA TAAAACAAAA ACAAAAGAGT ATTATTACCT GACCTCGCAA
    GCAATGGTTA AAGGGCATGC                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss389656820 MGP_WTSI_13_99463605 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs246647572 SNP C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss389656820 MGP_WTSI_13_99463605 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr13:98830158 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi6012 CpG island 6012 1048 bp proximal
Rr281821 regulatory region 281821 within coordinates
Tmem171 transmembrane protein 171 within coordinates
Tssr120815 transcription start site region 120815 1328 bp downstream
Tssr123632 transcription start site region 123632 1465 bp upstream
Tssr123633 transcription start site region 123633 1433 bp upstream
Tssr123634 transcription start site region 123634 925 bp upstream
Tssr123635 transcription start site region 123635 916 bp upstream
Tssr123636 transcription start site region 123636 863 bp upstream
Tssr123637 transcription start site region 123637 843 bp upstream
Tssr123638 transcription start site region 123638 505 bp upstream
Tssr123639 transcription start site region 123639 1119 bp downstream
Tssr123640 transcription start site region 123640 1156 bp downstream
Tssr123641 transcription start site region 123641 1175 bp downstream
Tssr123642 transcription start site region 123642 1243 bp downstream
Tssr123643 transcription start site region 123643 1374 bp downstream
Tssr123644 transcription start site region 123644 1910 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory