rs246649656 SNP Detail

Summary

• ID
  rs246649656
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:44128207 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTCA TTCTCTTCAC TGTCAACTAT
  Y
  TCTTACGTTT CTCTCCATCT CCCTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322198930	CHEV_7_51734153	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs246649656					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:44128207 () rs orientation: forward

Symbol	Name	Function Class
Tssr2224	transcription start site region 2224	1404 bp downstream
Tssr2225	transcription start site region 2225	1364 bp downstream
Tssr2226	transcription start site region 2226	838 bp downstream
Tssr2227	transcription start site region 2227	228 bp upstream
Tssr2228	transcription start site region 2228	1295 bp upstream
Tssr2229	transcription start site region 2229	1571 bp upstream
Tssr2230	transcription start site region 2230	1750 bp upstream
Tssr2231	transcription start site region 2231	1883 bp upstream
Tssr66223	transcription start site region 66223	1993 bp downstream
Tssr66224	transcription start site region 66224	1970 bp downstream
Tssr66225	transcription start site region 66225	1950 bp downstream
Tssr66226	transcription start site region 66226	1937 bp downstream
Tssr66227	transcription start site region 66227	1896 bp downstream
Tssr66228	transcription start site region 66228	1893 bp downstream
Tssr66229	transcription start site region 66229	1880 bp downstream
Tssr66230	transcription start site region 66230	1860 bp downstream
Tssr66231	transcription start site region 66231	1825 bp downstream
Tssr66232	transcription start site region 66232	1813 bp downstream
Tssr66233	transcription start site region 66233	1791 bp downstream
Tssr66234	transcription start site region 66234	1761 bp downstream
Tssr66235	transcription start site region 66235	1741 bp downstream
Tssr66236	transcription start site region 66236	1714 bp downstream
Tssr66237	transcription start site region 66237	1693 bp downstream
Tssr66238	transcription start site region 66238	1674 bp downstream
Tssr66239	transcription start site region 66239	1623 bp downstream
Tssr66240	transcription start site region 66240	1542 bp downstream
Tssr66241	transcription start site region 66241	1530 bp downstream
Tssr66242	transcription start site region 66242	1450 bp downstream
Tssr66243	transcription start site region 66243	1436 bp downstream
Tssr66244	transcription start site region 66244	1385 bp downstream
Tssr66245	transcription start site region 66245	1323 bp downstream
Tssr66246	transcription start site region 66246	1295 bp downstream
Tssr66247	transcription start site region 66247	1248 bp downstream
Tssr66248	transcription start site region 66248	1207 bp downstream
Tssr66249	transcription start site region 66249	1184 bp downstream
Tssr66250	transcription start site region 66250	1165 bp downstream
Tssr66251	transcription start site region 66251	1140 bp downstream
Tssr66252	transcription start site region 66252	1109 bp downstream
Tssr66253	transcription start site region 66253	1081 bp downstream
Tssr66254	transcription start site region 66254	1033 bp downstream
Tssr66255	transcription start site region 66255	1006 bp downstream
Tssr66256	transcription start site region 66256	957 bp downstream
Tssr66257	transcription start site region 66257	946 bp downstream
Tssr66258	transcription start site region 66258	903 bp downstream
Tssr66259	transcription start site region 66259	867 bp downstream
Tssr66260	transcription start site region 66260	760 bp downstream
Tssr66261	transcription start site region 66261	739 bp downstream
Tssr66262	transcription start site region 66262	732 bp downstream
Tssr66263	transcription start site region 66263	720 bp downstream
Tssr66264	transcription start site region 66264	696 bp downstream
Tssr66265	transcription start site region 66265	653 bp downstream
Tssr66266	transcription start site region 66266	636 bp downstream
Tssr66267	transcription start site region 66267	599 bp downstream
Tssr66268	transcription start site region 66268	583 bp downstream
Tssr66269	transcription start site region 66269	547 bp downstream
Tssr66270	transcription start site region 66270	512 bp downstream
Tssr66271	transcription start site region 66271	480 bp downstream
Tssr66272	transcription start site region 66272	428 bp downstream
Tssr66273	transcription start site region 66273	410 bp downstream
Tssr66274	transcription start site region 66274	405 bp downstream
Tssr66275	transcription start site region 66275	385 bp downstream
Tssr66276	transcription start site region 66276	365 bp downstream
Tssr66277	transcription start site region 66277	345 bp downstream
Tssr66278	transcription start site region 66278	301 bp downstream
Tssr66279	transcription start site region 66279	256 bp downstream
Tssr66280	transcription start site region 66280	234 bp downstream
Tssr66281	transcription start site region 66281	194 bp downstream
Tssr66282	transcription start site region 66282	177 bp downstream
Tssr66283	transcription start site region 66283	163 bp downstream
Tssr66284	transcription start site region 66284	151 bp downstream
Tssr66285	transcription start site region 66285	137 bp downstream
Tssr66286	transcription start site region 66286	98 bp downstream
Tssr66287	transcription start site region 66287	62 bp downstream
Tssr66288	transcription start site region 66288	37 bp downstream
Tssr66289	transcription start site region 66289	within coordinates
Tssr66290	transcription start site region 66290	58 bp upstream
Tssr66291	transcription start site region 66291	87 bp upstream
Tssr66292	transcription start site region 66292	125 bp upstream
Tssr66293	transcription start site region 66293	143 bp upstream
Tssr66294	transcription start site region 66294	164 bp upstream
Tssr66295	transcription start site region 66295	449 bp upstream
Tssr66296	transcription start site region 66296	582 bp upstream
Tssr66297	transcription start site region 66297	625 bp upstream
Tssr66298	transcription start site region 66298	650 bp upstream
Tssr66299	transcription start site region 66299	719 bp upstream
Tssr66300	transcription start site region 66300	726 bp upstream
Tssr66301	transcription start site region 66301	750 bp upstream
Tssr66302	transcription start site region 66302	764 bp upstream
Tssr66303	transcription start site region 66303	805 bp upstream
Tssr66304	transcription start site region 66304	813 bp upstream
Tssr66305	transcription start site region 66305	823 bp upstream
Tssr66306	transcription start site region 66306	857 bp upstream
Tssr66307	transcription start site region 66307	914 bp upstream
Tssr66308	transcription start site region 66308	967 bp upstream
Tssr66309	transcription start site region 66309	988 bp upstream
Tssr66310	transcription start site region 66310	1026 bp upstream
Tssr66311	transcription start site region 66311	1103 bp upstream
Tssr66312	transcription start site region 66312	1119 bp upstream
Tssr66313	transcription start site region 66313	1140 bp upstream
Tssr66314	transcription start site region 66314	1148 bp upstream
Tssr66315	transcription start site region 66315	1168 bp upstream
Tssr66316	transcription start site region 66316	1227 bp upstream
Tssr66317	transcription start site region 66317	1239 bp upstream
Tssr66318	transcription start site region 66318	1284 bp upstream
Tssr66319	transcription start site region 66319	1307 bp upstream
Tssr66320	transcription start site region 66320	1334 bp upstream
Tssr66321	transcription start site region 66321	1352 bp upstream
Tssr66322	transcription start site region 66322	1372 bp upstream
Tssr66323	transcription start site region 66323	1418 bp upstream
Tssr66324	transcription start site region 66324	1447 bp upstream
Tssr66325	transcription start site region 66325	1477 bp upstream
Tssr66326	transcription start site region 66326	1518 bp upstream
Tssr66327	transcription start site region 66327	1532 bp upstream
Tssr66328	transcription start site region 66328	1548 bp upstream
Tssr66329	transcription start site region 66329	1587 bp upstream
Tssr66330	transcription start site region 66330	1606 bp upstream
Tssr66331	transcription start site region 66331	1620 bp upstream
Tssr66332	transcription start site region 66332	1641 bp upstream
Tssr66333	transcription start site region 66333	1689 bp upstream
Tssr66334	transcription start site region 66334	1701 bp upstream
Tssr66335	transcription start site region 66335	1710 bp upstream
Tssr66336	transcription start site region 66336	1719 bp upstream
Tssr66337	transcription start site region 66337	1737 bp upstream
Tssr66338	transcription start site region 66338	1793 bp upstream
Tssr66339	transcription start site region 66339	1844 bp upstream
Tssr66340	transcription start site region 66340	1889 bp upstream
Tssr66341	transcription start site region 66341	1934 bp upstream
Tssr66342	transcription start site region 66342	1996 bp upstream
Tssr72199	transcription start site region 72199	1300 bp upstream
Tssr72200	transcription start site region 72200	342 bp upstream
Tssr72201	transcription start site region 72201	147 bp downstream
Tssr72202	transcription start site region 72202	1010 bp downstream
Tssr72203	transcription start site region 72203	1396 bp downstream
Tssr72204	transcription start site region 72204	1992 bp downstream