rs246652787 SNP Detail

Summary

• ID
  rs246652787
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:156764549 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTTAGAAAC TTCTGGAAGC TAGCAGTACA CTAAGTCCCC
  AGCTGTGCAT TTTCCCAAAG TCTCCACTCC AGAGACCGGG GGAGTGGGGG GGGGGGGGGG
  R
  CAGGATGGGA CTGGGCACAT CACACTCTAG AAACAACAGT CTAGGCCTGG GATCCCTGTA
  TGATTACTGA TAGCTGGCCT CCCACTCTGA AGTGGAGAG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	FVB/NJ	KK/HlJ	LG/J	LP/J	NOD/ShiLtJ	NON/ShiLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ
ss352049289	MGP_WTSI_1_158867110	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	G	A	A	A	G	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	FVB/NJ	KK/HlJ	LG/J	LP/J	NOD/ShiLtJ	NON/ShiLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ
rs246652787					SNP	A	A	G	A	A	A	G	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352049289	MGP_WTSI_1_158867110	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156764549 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4930439D14Rik	RIKEN cDNA 4930439D14 gene			1815 bp upstream
Cpgi904	CpG island 904			1731 bp proximal
Ralgps2	Ral GEF with PH domain and SH3 binding motif 2			Intron
				Noncoding-Transcript-Variant
Rr367037	regulatory region 367037			1833 bp upstream
Rr421284	regulatory region 421284			508 bp proximal
Rr421285	regulatory region 421285			1402 bp proximal
Rr421286	regulatory region 421286			1829 bp proximal
Rr421287	regulatory region 421287			1991 bp proximal
Tssr14474	transcription start site region 14474			857 bp downstream
Tssr14475	transcription start site region 14475			1803 bp downstream
Tssr14476	transcription start site region 14476			1832 bp downstream