rs246657013 SNP Detail

Summary

• ID
  rs246657013
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:112641762 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACACCCCA CTCCCGGAGA
  AGAACTCACT CTCCTCTCAG CCACGCCCCA TACCCTTCAG ACGGGGATGG GGATGGGGGG
  CTCTGTTCTG TGCCCTATCT GCTGCACAGC TGCCCCAGCT CAGAGAGCCT CCAGGGCGCT
  AAGTCAGAGG CTCAGCAGCA GTTCTGTTCT GCTCCAGCAG TATCCCTGAC CCTGAGAGTG
  R
  CCTTCAGAGG CTGAGAGTCA CACAAATATC CATCACTCGC CCAGCAAACC TTCACCCCAG
  GCCCCCAACT CCTCCTCTCC TACTTCCCCC ATCCCGTTGC TACACAGTTA GAGCCAGCAG
  GGCGCCCTCT TGTGGAACAC AGCAATTTCT GGCTGTTCTC TAGTGACCCT TCTCACTCGG
  ATGCTCTTCC TGGAAGCCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss387390210	MGP_WTSI_12_113913539	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs246657013					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387390210	MGP_WTSI_12_113913539	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:112641762 () rs orientation: forward

Symbol	Name	Function Class
Akt1	thymoma viral proto-oncogene 1	496 bp upstream
Cpgi5173	CpG island 5173	419 bp distal
Gm30150	predicted gene, 30150	within coordinates
Rr369631	regulatory region 369631	102 bp upstream
Rr473553	regulatory region 473553	1063 bp distal
Rr473554	regulatory region 473554	907 bp distal
Rr473555	regulatory region 473555	928 bp distal
Rr473556	regulatory region 473556	within coordinates
Rr473557	regulatory region 473557	325 bp distal
Rr473558	regulatory region 473558	119 bp proximal
Rr473559	regulatory region 473559	310 bp proximal
Rr473560	regulatory region 473560	556 bp proximal
Tssr115391	transcription start site region 115391	905 bp downstream
Tssr117877	transcription start site region 117877	1301 bp upstream
Tssr117878	transcription start site region 117878	1242 bp upstream
Tssr117879	transcription start site region 117879	1053 bp upstream
Tssr117880	transcription start site region 117880	961 bp upstream
Tssr117881	transcription start site region 117881	943 bp upstream
Tssr117882	transcription start site region 117882	564 bp upstream
Tssr117883	transcription start site region 117883	514 bp upstream
Tssr117884	transcription start site region 117884	491 bp upstream