rs246662320 SNP Detail

Summary

• ID
  rs246662320
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:93870657 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCGATCTT TGGCATACAT
  AAAACCCTTT TCCTGGAGTA CATTTTCTCC CATCAATCTT CCTAATTTCA TTCAGAGCTG
  AAGATTTACC TAGGGTATCA CTTGCTGTGT GTAGCTTTTT AAAGTGCTAT GAGTGGACAA
  TGGGTTCCAA ATTATGCTTC CACGGGCAGT TTTTAGATAT CTCAATACTT CACATTCTGT
  W
  CCGTACCTCA CCCTCCCATT ATACACCACG GGGGATTTCT TCTCTTTCTC TTGTATGAAT
  TCCCTGAAAT CTAGTTGGCT GAGGGAAAGT ATGGCATACA TATTCAATAC ATACACATAC
  ACGTTCCAGG GTGTGGGTAT TGACCTGTCT GATGGGGTAA AAATGGCACT AAAGCCATTA
  ACTAGGCTTT ATTTTTTAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss381314832	MGP_WTSI_10_93497540	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs246662320					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381314832	MGP_WTSI_10_93497540	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:93870657 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2121	CpG island 2121	511 bp proximal
Fgd6	FYVE, RhoGEF and PH domain containing 6	1206 bp upstream
Gm49628	predicted gene, 49628	within coordinates
Rr402165	regulatory region 402165	920 bp upstream
Rr437370	regulatory region 437370	within coordinates
Rr437371	regulatory region 437371	900 bp proximal
Rr437372	regulatory region 437372	1166 bp proximal
Rr437373	regulatory region 437373	1217 bp proximal
Tssr3327	transcription start site region 3327	1569 bp upstream
Tssr95293	transcription start site region 95293	654 bp upstream
Tssr95294	transcription start site region 95294	1249 bp upstream
Tssr95295	transcription start site region 95295	1262 bp upstream
Tssr98985	transcription start site region 98985	933 bp downstream
Tssr98986	transcription start site region 98986	976 bp downstream
Tssr98987	transcription start site region 98987	994 bp downstream
Tssr98988	transcription start site region 98988	1928 bp downstream
Vezt	vezatin, adherens junctions transmembrane protein	within coordinates