rs246679684 SNP Detail

Summary

• ID
  rs246679684
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:72344785 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTAAATCTC AAAAAGTTCT
  TAAGAAAAAA AGATAAAGTA TGATTGTGAA AACACGTAGA GTCTTTAACA ATGTTGATTT
  CACAGAAACT GTAAGCAGAT TGGTGATGAC AGGGGCTAGG GCAGGGGGAA ATGGCGAAGG
  GCTAGACTGC AGTTAGCAAA ATATAGTCAG AAGTACAGGG GTGCACAGCC AGGTGGGGGT
  R
  TAGGATGGTA ATATGCTGTA CATTACAAAA AAAAACCACA CAGAGGAAAA GATTGTTTAA
  CCCTAAAGAA ATATTTTGAT GTTTACTGAT TTAAATATTA TACAATGCAC CAGGATGTTC
  CATGATATTC CACAAGACAC AATTTTTGGT TTTAATGTAT TAGCTAAAAT TTAAAGTTAC
  ACAAACCACA TTCTTAGTAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378018581	MGP_WTSI_9_72285310	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs246679684					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378018581	MGP_WTSI_9_72285310	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:72344785 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22015	CpG island 22015	515 bp proximal
Mns1	meiosis-specific nuclear structural protein 1	491 bp upstream
Rr401506	regulatory region 401506	875 bp upstream
Rr682742	regulatory region 682742	542 bp proximal
Rr682743	regulatory region 682743	1043 bp proximal
Tssr85997	transcription start site region 85997	482 bp upstream
Tssr85998	transcription start site region 85998	1016 bp upstream
Tssr85999	transcription start site region 85999	1031 bp upstream
Tssr86000	transcription start site region 86000	1076 bp upstream
Tssr86001	transcription start site region 86001	1106 bp upstream
Tssr86002	transcription start site region 86002	1340 bp upstream