rs246694949 SNP Detail

Summary

• ID
  rs246694949
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:89280560 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTGAGGCC AGGCAGGAGG
  ACCTTGACAG CAGGAGCATC CCTGCCTTGC AGTTGGGCCA TGAGAACGGG ATGGAGTCTG
  AGAGAAAGAA CCACACCACC TGTCTGGTGG CCATTCTGAG AGCTCATAGC CCTGATGATC
  AGAGAAGCTA CTCACCTTCC CTCACCAAAC AGCTACTTTT TTATTTTTAT TTATTTATTT
  W
  TTATTGCACA AAGACATTTC AGGACCTGAT AACAAAGGGA TCTGCAGGCA AAGGCCCTAG
  CCCAGTGAAG CCAGTATCAT AAGGGGGAGG CAGGCAATAT ACCACAATAG CAATGAACTA
  GTAGATGACT TGTTCATTTA TACCTAGGGG AAAACCCTTT TCTTATGCAT CCCCTGGGGA
  TGGTCAGCAC TGAAGGGAAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss372259699	MGP_WTSI_7_96779862	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A	A	A	A	T	A	A	A	A	A	T	A	A	A	A	A	A	T	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs246694949					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A	A	A	A	T	A	A	A	A	A	T	A	A	A	A	A	A	T	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372259699	MGP_WTSI_7_96779862	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:89280560 () rs orientation: forward

Symbol	Name	Function Class
A230065N10Rik	RIKEN cDNA A230065N10 gene	745 bp downstream
Cpgi19393	CpG island 19393	1259 bp proximal
Me3	malic enzyme 3, NADP(+)-dependent, mitochondrial	932 bp upstream
Rr650822	regulatory region 650822	893 bp proximal
Rr650823	regulatory region 650823	1762 bp proximal
Tssr67672	transcription start site region 67672	1053 bp upstream
Tssr67673	transcription start site region 67673	1065 bp upstream
Tssr67674	transcription start site region 67674	1131 bp upstream
Tssr67675	transcription start site region 67675	1147 bp upstream
Tssr67676	transcription start site region 67676	1204 bp upstream
Tssr67677	transcription start site region 67677	1337 bp upstream
Tssr67678	transcription start site region 67678	1523 bp upstream
Tssr67679	transcription start site region 67679	1599 bp upstream
Tssr67680	transcription start site region 67680	1653 bp upstream