rs246709127 SNP Detail

Summary

• ID
  rs246709127
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:4029563 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGCATTCC CAGAAAGTTC
  TCCTGGTGTT CCTGAAGGTG GACATAGAAA CATCGAAGAC AATAACCTAG TTGTGAGATG
  TCCAAAGTCT AGGCGGGCAG GGAGCTTGTT ACAGAAGCAA ATTTCAAAGC TGGGCATGGC
  AGTGCATGTA TGCCCATAGT GTCAGCACTT GGTAGGTTAA GGCAGGAAAG AGGATCCTGA
  R
  TTTGATGTCA GCATAGGCTA CATAAGATCC AAGGCCAGCC AGGGCTGCAA GGGGTCCGGG
  GGTCTCTCCT AAATAAATCA CATACACACA AACACAGATT TCAGAACTCG CTGTGGCTGA
  CCACTCACGC TCCCTAGGGA AACTGCATAT TTAACCCGGT GGGCGTGGGA ACAACAGAGC
  TCAACCCCAG CAATGAAAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323873058	CHEV_12_3979563	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs246709127					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:4029563 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4371	CpG island 4371	1982 bp proximal
Efr3b	EFR3 homolog B	within coordinates
Rr265366	regulatory region 265366	1637 bp proximal
Rr267334	regulatory region 267334	1163 bp distal
Rr403219	regulatory region 403219	1802 bp upstream