rs246709733 SNP Detail

Summary

• ID
  rs246709733
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:48044933 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCGGGGCAG CCTCGGAGGC
  GAGCCAGCAG CACTCCTCCA ACTCTGCTCC ACCCGGAGCC TGACAGCTGG GCGGTCCCGC
  CTGACCCGCG GGCGGGCTGC GGCACCCTCT GGTAGACCGG CGCCCTGGCA AGCGGCTCCC
  GTGCAGAGGG GTTGGCCGCG CGAATCTGAG AAGCCTCAGG GCTGGGGTCC GCAGCTCCCC
  R
  TGGTTTCCAT TGTGCGGCCG TGAGAATGGC CGGAGGACGC GCGCACGCGC GCGCGCACAC
  ACACACACAC ACACACACAC ACACACACAC ACACCCTCGC ACACGCGGAA CCGGCTGGGC
  CAGGGGAGGG AGGAGGAGGG TGACGTAGCG TCCCATGTCG TCACATTGAC GTCTCGCATT
  CCAGGCACTC TATGGAGAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss361430069	MGP_WTSI_4_48057805	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs246709733					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss361430069	MGP_WTSI_4_48057805	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:48044933 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14277	CpG island 14277	1124 bp distal
Cpgi14278	CpG island 14278	within coordinates
Gm57084	predicted gene, 57084	1720 bp upstream
Gm68858	predicted gene, 68858	1999 bp downstream
Gm69235	predicted gene, 69235	705 bp downstream
Nr4a3	nuclear receptor subfamily 4, group A, member 3	220 bp upstream
Rr376438	regulatory region 376438	within coordinates
Rr591924	regulatory region 591924	1505 bp distal
Rr591925	regulatory region 591925	1958 bp distal
Rr591926	regulatory region 591926	1271 bp distal
Rr591927	regulatory region 591927	within coordinates
Rr591928	regulatory region 591928	231 bp proximal
Rr591929	regulatory region 591929	592 bp proximal
Tssr37180	transcription start site region 37180	1910 bp downstream
Tssr37181	transcription start site region 37181	1392 bp downstream
Tssr37182	transcription start site region 37182	1361 bp downstream
Tssr37183	transcription start site region 37183	1281 bp downstream
Tssr37184	transcription start site region 37184	1256 bp downstream
Tssr37185	transcription start site region 37185	1084 bp downstream
Tssr37186	transcription start site region 37186	1069 bp downstream
Tssr37187	transcription start site region 37187	182 bp upstream
Tssr37188	transcription start site region 37188	211 bp upstream
Tssr37189	transcription start site region 37189	242 bp upstream
Tssr37190	transcription start site region 37190	297 bp upstream
Tssr37191	transcription start site region 37191	324 bp upstream
Tssr37192	transcription start site region 37192	391 bp upstream
Tssr37193	transcription start site region 37193	447 bp upstream
Tssr37194	transcription start site region 37194	1037 bp upstream
Tssr41630	transcription start site region 41630	1693 bp upstream
Tssr41631	transcription start site region 41631	29 bp upstream
Tssr41632	transcription start site region 41632	18 bp downstream