rs246716121 SNP Detail

Summary

• ID
  rs246716121
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148419872 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTCTTATA GATACTTATA
  ATTAAACTAA TAAATTCAAT ATAACAAGTA AATATGTAAC TCCTTCCCCC AGTGGCCTAG
  AAAAATACAC ATCCAAGTCC TCTTTAGGGA AATGGAAGAT CTCTCTGTAT CCCAGGATAC
  ATTTCTCAGT TTAGCCTGTG GTCTCTAGAC TCAGTCGTCG CTTTGAACCT GAGGTGACAC
  A
  GAGAGATAAT CGTGGTTGCC TGTAGTAGAG GAGGCGGTTC CCCTCATGGT CGTGGGGGGG
  GGGGGGAAGC AGGGAGGAAG GGGCTAAGGA GAAGGAAGCT CTTAACAGGG CCCAGCACCA
  GAGATCCATT CTCTAACTAA ACCCCACCTC CTTCCTTTCC TGAGCTCCCA ACAGCATCAA
  AGAGAGATTG GTTGACTGAT                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	MOLF/EiJ	SPRET/EiJ
ss363613762	MGP_WTSI_4_147709524	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	MOLF/EiJ	SPRET/EiJ
rs246716121					SNP	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363613762	MGP_WTSI_4_147709524	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148419872 () rs orientation: forward

Symbol	Name	Function Class
Gm68587	predicted gene, 68587	within coordinates
Rr87387	regulatory region 87387	329 bp proximal
Tssr40270	transcription start site region 40270	1930 bp downstream