rs246718006 SNP Detail

Summary

• ID
  rs246718006
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:130547175 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTTCTGTGT CTTCATTTCT TTACCTGTGA
  AGGGaagacc agagaaggta cacacactgg taatcttatc actggggaaa ctgaggcagg
  aggattgctg caagttcagt tcagcctggg ctatgcagta agactgtttc aaagagagag
  R
  cagagacaga gagacAGGGA GAGAGGCCTG GTGTGGTCTG TACATGGTCT TTCCTGACCA
  TTTAGTTCTT AGAATTCTGG AACAGTCCAC AAGCCAGCTG CTCCGTGGTT GTCATCGTCA
  TGGCCTGAGG GTGACTAAGT GGGTGCTGTG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321318849	CHEV_4_130375779	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs246718006					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130547175 () rs orientation: forward

Symbol	Name	Function Class
Sdc3	syndecan 3	within coordinates
Tssr39265	transcription start site region 39265	1258 bp downstream
Tssr39266	transcription start site region 39266	1236 bp downstream
Tssr39267	transcription start site region 39267	1217 bp downstream
Tssr39268	transcription start site region 39268	1187 bp downstream
Tssr39269	transcription start site region 39269	1150 bp downstream
Tssr39270	transcription start site region 39270	1121 bp downstream
Tssr39271	transcription start site region 39271	1076 bp downstream
Tssr39272	transcription start site region 39272	1060 bp downstream
Tssr39273	transcription start site region 39273	1005 bp downstream
Tssr39274	transcription start site region 39274	963 bp downstream
Tssr39275	transcription start site region 39275	947 bp downstream
Tssr39276	transcription start site region 39276	911 bp downstream
Tssr39277	transcription start site region 39277	894 bp downstream
Tssr39278	transcription start site region 39278	883 bp downstream
Tssr43599	transcription start site region 43599	1155 bp upstream
Tssr43600	transcription start site region 43600	1112 bp upstream
Tssr43601	transcription start site region 43601	945 bp upstream