rs246725046 SNP Detail

Summary

• ID
  rs246725046
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:88198512 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCTGACCT GGATGGTCTG
  TCTGTTGTAG ACTTTCACCA CGTGGAAGTT AAAACTGTAG ATGCCTTTGC GCGGGGCGAT
  GAAAGTGCTG CGTTCTGAGT CAAAGTTGTT CCCGATGTTC ACTAGTACCT ACAAGAAGAC
  AGGAACGAAA AGGGGTAGAC CGGAGTCCGC CCGAGCGTGG CCTCGCGCTT CTGCAGAGTC
  Y
  CTGGAGAGTA TATCCCACAT CCGCCTTCCA AGCTCTCCCT GTCACCCCCT CACCAATCCA
  TTCTGGGTGC TGCAAAAGAA TGGGGAACTC ACCTGGTCGA AGTAGATGAT CATGGTGCGA
  TTACTCATCT CGGACGGCTC ATGGTTGGTG CTCCTGATGG CAGAGAAAGC CACCTTGGCG
  CTGCCGGAGC GCACAGAGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375466009	MGP_WTSI_8_89995783	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs246725046					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375466009	MGP_WTSI_8_89995783	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:88198512 () rs orientation: forward

Symbol	Name	Function Class
Cbln1	cerebellin 1 precursor protein	within coordinates
Cbln1os	cerebellin 1 precursor protein opposite strand	928 bp upstream
Cpgi20771	CpG island 20771	616 bp distal
Cpgi20772	CpG island 20772	within coordinates
Rr666962	regulatory region 666962	492 bp proximal
Rr666963	regulatory region 666963	617 bp proximal
Rr666964	regulatory region 666964	1070 bp proximal
Rr666965	regulatory region 666965	1156 bp proximal
Rr666966	regulatory region 666966	1444 bp proximal
Tssr2634	transcription start site region 2634	642 bp downstream
Tssr78595	transcription start site region 78595	887 bp upstream
Tssr78596	transcription start site region 78596	899 bp upstream
Tssr78597	transcription start site region 78597	921 bp upstream
Tssr78598	transcription start site region 78598	954 bp upstream
Tssr78599	transcription start site region 78599	982 bp upstream
Tssr78600	transcription start site region 78600	1005 bp upstream
Tssr78601	transcription start site region 78601	1012 bp upstream
Tssr78602	transcription start site region 78602	1269 bp upstream
Tssr78603	transcription start site region 78603	1366 bp upstream
Tssr78604	transcription start site region 78604	1495 bp upstream
Tssr78605	transcription start site region 78605	1523 bp upstream
Tssr82308	transcription start site region 82308	1962 bp upstream
Tssr82309	transcription start site region 82309	1775 bp upstream
Tssr82310	transcription start site region 82310	1582 bp upstream
Tssr82311	transcription start site region 82311	1423 bp upstream
Tssr82312	transcription start site region 82312	1233 bp upstream
Tssr82313	transcription start site region 82313	1207 bp upstream
Tssr82314	transcription start site region 82314	237 bp downstream
Tssr82315	transcription start site region 82315	277 bp downstream
Tssr82316	transcription start site region 82316	316 bp downstream
Tssr82317	transcription start site region 82317	481 bp downstream
Tssr82318	transcription start site region 82318	659 bp downstream
Tssr82319	transcription start site region 82319	692 bp downstream
Tssr82320	transcription start site region 82320	719 bp downstream
Tssr82321	transcription start site region 82321	731 bp downstream