rs246748109 SNP Detail

Summary

• ID
  rs246748109
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:31217264 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAGATTGGT TTCCGGCCCC
  GGGTGGGCGC GGACTTGGTT CAGTGCGCGC TCCGGAGCGG TGTCCCGGGA GCGCGGTCCT
  GCGGGCCGCT TGCGCGGGGA TCCGGGGGGA CTGCGGCCGC GCGAGGAGAG CTCCAATCCG
  GGTGCCGGGC AAGTGCAAGG CCATGAACGG CACGGCGAAC CCGCTGCTGG ACCGGGAGGA
  R
  CACTGTCTGC GGCTAGGGGA AAGCTTCGAG AAGCGGCCGC GGGCCTCCTT CCACACGATT
  CGCTGTGAGT GAGCGCCCCT CCAGGTTCAC TTGGGGCTCC CTGGCCGCCA CGTGCAAGCC
  CAGACTCCCC TGGCTAATCC CGGCTCGAAA GCGTCGCTTT CCTTACCTCT CATCCCTTAG
  CCTCTGGAAC TTCGATCTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss390704812	MGP_WTSI_14_32308493	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs246748109					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss390704812	MGP_WTSI_14_32308493	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:31217264 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6292	CpG island 6292	within coordinates
Eaf1	ELL associated factor 1	within coordinates
Gm63056	predicted gene, 63056	1041 bp upstream
Mettl6	methyltransferase 6, methylcytidine	267 bp upstream
Rr296978	regulatory region 296978	within coordinates
Tssr124943	transcription start site region 124943	940 bp downstream
Tssr124944	transcription start site region 124944	212 bp downstream
Tssr124945	transcription start site region 124945	126 bp downstream
Tssr124946	transcription start site region 124946	1110 bp upstream
Tssr127965	transcription start site region 127965	1042 bp upstream
Tssr127966	transcription start site region 127966	322 bp upstream
Tssr127967	transcription start site region 127967	253 bp upstream