rs246749032 SNP Detail

Summary

• ID
  rs246749032
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:45160921 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTGCTGGA AATTGAACTC
  AGGACTGCTA GTAGAGCAAT GAGTGCTCTT AACCACTGAG CCATCTCACC AGCCCCTACT
  TTGGTATCTT TTGACTCCAT GGAAAAGATA TCTGTCTTAG TCACGCAGCC TCTTTGTGAT
  TTCAGAAAAC ACTTCCCAGA AGATGTCACC TCAATGGTGC TGGTCTCTTC TTAATCACAG
  M
  TAACTTTTTA GCTCCAGCTA ACAAGCATCA ATAGTCCCAG TAATGCAAAG TTTTCGCTTT
  AGTAGTTCTG GTATCTTGTT AATCACAGCT GATTCTTCAG CCCCAGCTAA CCAGAACCAC
  AGAAGCTTCA CAATCAAAAT AGCAGTGGCC CTGATAAGAG TCTTTAATTT TCCCTCTGAA
  ATTTCACAAG CCAGGCCTCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss371178600	MGP_WTSI_7_52766867	EVA_MGPV3	EVA_MGPV3	f	SNP	C	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A	A	A	C	C	A	A	A	A	A	C	A	A	A	A	C	A	C	A	A	A	A	A	C	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs246749032					SNP	C	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A	A	A	C	C	A	A	A	A	A	C	A	A	A	A	C	A	C	A	A	A	A	A	C	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss371178600	MGP_WTSI_7_52766867	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45160921 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi19064	CpG island 19064			928 bp distal
D7Mit81	DNA segment, Chr 7, Massachusetts Institute of Technology 81			1045 bp proximal
Gm45478	predicted gene 45478			860 bp downstream
Nucb1	nucleobindin 1			1108 bp upstream
Rr400313	regulatory region 400313			915 bp downstream
Rr646472	regulatory region 646472			1182 bp distal
Rr646473	regulatory region 646473			601 bp distal
Rr646474	regulatory region 646474			437 bp distal
Tssr72423	transcription start site region 72423			1137 bp upstream
Tssr72424	transcription start site region 72424			1098 bp upstream
Tssr72425	transcription start site region 72425			1084 bp upstream
Tulp2	TUB like protein 2			Intron
				Noncoding-Transcript-Variant