rs246758125 SNP Detail

Summary

• ID
  rs246758125
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:32607888 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCGTCGAT CTCAAGCCGA
  CTCTCACCAT CATCAAGACA GAAAAAGTGG ATCTCGAGCT TTTCCCTTCC CCGGGTGAGT
  GGCAACAGTG AGGCCCCCAC CCCAGCTCCG GGTCCCCTTC TGGGCTGCGC TGCTCCCTCA
  GGAGCACTGG ATGCAGAAGC CAGGAGGACT GTTGGTGGCC CAAGACCCTT GGCTTTTTTT
  K
  GGGGGGGGGG GGCTGGGTGT ATTTATTTTC ACAGCTGTGT GTTTTGTGAC TAATGGGAAA
  ACGCTTATAG AATTTCCAGC TCCCTAATTC CGTTGTTTGA ATTTTCCCAC ATAAGCGAGA
  AACTTCTGGT AATATTCCTT AATGTTAGCA AGGGGCCTGA CACTGTCTCT AAGATCACCC
  CCACCCCGTC CCAACTGTGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	RF/J	RIIIS/J	SM/J	SPRET/EiJ	ST/bJ	WSB/EiJ
ss377132764	MGP_WTSI_9_32504177	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	RF/J	RIIIS/J	SM/J	SPRET/EiJ	ST/bJ	WSB/EiJ
rs246758125					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377132764	MGP_WTSI_9_32504177	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:32607888 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21544	CpG island 21544	48 bp distal
Ets1	E26 avian leukemia oncogene 1, 5' domain	within coordinates
Rr206170	regulatory region 206170	within coordinates
Rr401307	regulatory region 401307	516 bp downstream
Tssr84270	transcription start site region 84270	906 bp downstream
Tssr84271	transcription start site region 84271	887 bp downstream
Tssr84272	transcription start site region 84272	873 bp downstream
Tssr84273	transcription start site region 84273	817 bp downstream
Tssr84274	transcription start site region 84274	776 bp downstream
Tssr84275	transcription start site region 84275	497 bp downstream
Tssr84276	transcription start site region 84276	273 bp upstream
Tssr84277	transcription start site region 84277	394 bp upstream
Tssr84278	transcription start site region 84278	1335 bp upstream
Tssr84279	transcription start site region 84279	1655 bp upstream