rs246772779 SNP Detail

Summary

• ID
  rs246772779
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:191711289 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATACAAGG GGGGAGCCTC
  AGCTGCTGCC CTGGCTGTGG GTTCTTCTGG ACCAATACCA CAGGGTTCTT GGATTAAGGG
  CAGCATCCTC TTCACTGTGT GGCACTAGTG AGCATCGTGA TCCCCTCTAA CTGTCTGAAA
  CCAGAGTCCT CTTGCCTTTG GGATTCAGGG AAGGCTTTGA GTGTTTCTAA GGTGAGAAGC
  Y
  ACTGTCCTGA GGGATGTCCA GAAATAGACC AGAGGGGAGG CTCAGAGTGT GCGCAGAGGT
  GACAGTGTAA CGAAGGGAAG AAGGGGGAGG TGGGAGGAGG AGAGCGACGC CCCAGGCGCC
  TGCAATCAGT TTCTCAGCTC TCTATACAGC CACCAGATCA CAGGGCCTGG GATGGCCAGG
  ATCCAGGTTG GAGTCAAGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352844430	MGP_WTSI_1_193803209	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs246772779					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352844430	MGP_WTSI_1_193803209	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:191711289 () rs orientation: forward

Symbol	Name	Function Class
Gm70534	predicted gene, 70534	1144 bp upstream
Rd3	retinal degeneration 3	Intron
Rr426276	regulatory region 426276	1945 bp distal
Rr426277	regulatory region 426277	1763 bp distal
Rr426278	regulatory region 426278	within coordinates
Rr426279	regulatory region 426279	1974 bp proximal
Tssr10797	transcription start site region 10797	1939 bp downstream
Tssr10798	transcription start site region 10798	1928 bp downstream
Tssr10799	transcription start site region 10799	1883 bp downstream
Tssr10800	transcription start site region 10800	1069 bp downstream
Tssr10801	transcription start site region 10801	1037 bp downstream