rs246779056 SNP Detail

Summary

• ID
  rs246779056
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:123129934 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGAGAATA GGTGAGAAAT
  AGGAAAGGGG GCTTCTTTTG AGAAAGATGA GCTTTTAACA CAAGCCAGCC TCATTGGAAA
  TGAAATAATG TCTTCCTGTA CCGCCCTTGT AAAAGGCTCA GTCAGATCCT ACCTGTGTTA
  GTCTGTTGTA TCATCTCAGG CCAATTGAGC AACTCTGTGT CCAAAGACAA GGGGGCAGAA
  R
  ACAGAAATGA CAACTTCGCT TACACACACA CATACACACA TACCCCGTGA GCTTGACTGT
  CCCTGGATGG AGCACTCAGA AACTCAGGGA TTCTGGACTA GGAGCAAACA AATTTATGTT
  GTTATTCTAG CTCTTGGCTT TCCTAGCCCT AGGTAGCCTG GAACTTGCCA TGTAAACCAG
  GCTTGGTCTA GAACTTTGCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366530206	MGP_WTSI_5_123441880	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs246779056					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366530206	MGP_WTSI_5_123441880	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:123129934 () rs orientation: forward

Symbol	Name	Function Class
A930024E05Rik	RIKEN cDNA A930024E05 gene	within coordinates
Gm44574	predicted gene 44574	within coordinates
Gm73435	predicted gene, 73435	396 bp downstream
Rr620035	regulatory region 620035	1930 bp distal
Rr620036	regulatory region 620036	1055 bp distal
Rr620037	regulatory region 620037	within coordinates
Tssr48737	transcription start site region 48737	1928 bp downstream
Tssr48738	transcription start site region 48738	1102 bp downstream
Tssr48739	transcription start site region 48739	1091 bp downstream
Tssr48740	transcription start site region 48740	1046 bp downstream
Tssr48741	transcription start site region 48741	1007 bp downstream
Tssr53175	transcription start site region 53175	1581 bp upstream
Tssr53176	transcription start site region 53176	1464 bp upstream
Tssr53177	transcription start site region 53177	1408 bp upstream
Tssr53178	transcription start site region 53178	1376 bp upstream
Tssr53179	transcription start site region 53179	1342 bp upstream
Tssr53180	transcription start site region 53180	1298 bp upstream