rs246780504 SNP Detail

Summary

• ID
  rs246780504
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:47448993 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTCACGAC TGGTATTTGT
  CTGAAATAAA CACTCAGGGA AGGAAATGAC CGTGAAAGCA AAACACCTCC CAAATCCAAA
  CAGACATGAT GTCTCCTTTG CTTCAGATAA ACAAGCGTCT CCCCGCCACC ATATGGCTCC
  AAACACACCT ATACACACCT GTGCGCGCAA AGAAGTCTGC TTTCCAACTT ACACCGGCAA
  S
  CCCTCCGACG GAGGTGGCTA TGGTTTGCAT CTGGCATCTG CAGAGCCATC TTAAAGAAAC
  AGGGTCTGAG GCCAACGCCC GTTTACCTAA GGTCTCCCAA GCAGGGAGGC TGACCCAAGC
  AGCGGGTGCT CATCCTTCCC AGCCCCACCC GGGGCAGGGG CTGGCAGAGA GGAAGGAAGT
  GGAGTGCGGC CTGCACTACG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325826232	CHEV_19_47535044	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs246780504					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:47448993 () rs orientation: forward

Symbol	Name	Function Class
Gm52384	predicted gene, 52384	831 bp downstream
Rr549060	regulatory region 549060	1318 bp distal
Rr549061	regulatory region 549061	within coordinates
Rr549062	regulatory region 549062	279 bp proximal
Rr549063	regulatory region 549063	887 bp proximal
Rr549064	regulatory region 549064	1476 bp proximal
Sh3pxd2a	SH3 and PX domains 2A	within coordinates
Tssr159729	transcription start site region 159729	54 bp downstream
Tssr159730	transcription start site region 159730	204 bp downstream