rs246791494 SNP Detail

Summary

• ID
  rs246791494
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:58320086 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCTA TGGTTTTCAA CCCATGTAGG
  Y
  TTCAGCTGTG ACTTTTTCCT TCATC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325209508	CHEV_16_58499836	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs246791494					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:58320086 () rs orientation: forward

Symbol	Name	Function Class
Rr404899	regulatory region 404899	1026 bp downstream
Rr517409	regulatory region 517409	93 bp distal
Rr517410	regulatory region 517410	1924 bp proximal
St3gal6	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	within coordinates
Tssr4919	transcription start site region 4919	124 bp downstream
Tssr4920	transcription start site region 4920	150 bp downstream
Tssr138857	transcription start site region 138857	1004 bp downstream
Tssr141615	transcription start site region 141615	376 bp upstream
Tssr141616	transcription start site region 141616	361 bp upstream
Tssr141617	transcription start site region 141617	321 bp upstream
Tssr141618	transcription start site region 141618	96 bp downstream