AAGGGAAGGA GTTGGAAGAG AAGGAAGAAG AGGAGTAGTG AGAGGAGGAG GAGGAGGAGG AGGAGTGAGA GGAGGAGGAG GAGGAGGAGG AGGAGGAGGA GGAGGAGGAG GAGGAGGAGG AGGAGGAGGA GGAAGAGTCA GGGACAGATG CAGTAGAGCA AGCTGGTAGA AGTTTGGCAA GTCCAAACCT TCTCACAGCA W GGTGCAATCT AAGCTTTCAG GAAGCTGAGA CAAAGGGATT GCTGGGAGCT TGAGTCCAGG ATTCAGAGTG AGAGTTCCAA GGCAGCCAGA GCCATCGAGC GATACAGCAA GATCCTAGCT GGGAAACCAC TCCAAACCGA AAATCCTACC TACAAACTGT CGTAGGCTTC TTGCCGTTTT GATGATATCA ACTACACTCG W = A/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LEWES/EiJ |
LG/J |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SM/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
WSB/EiJ |
ZALENDE/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss394657258 | MGP_WTSI_15_78404080 | EVA_MGPV3 | EVA_MGPV3 | f | SNP | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | A | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T |
SNP Consensus Information | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SNP | Consensus Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LEWES/EiJ |
LG/J |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SM/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
WSB/EiJ |
ZALENDE/EiJ |
||||
rs246798257 | SNP | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | A | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss394657258 | MGP_WTSI_15_78404080 | SC_MOUSE_GENOMES | SC_MOUSE_GENOMES | f | SNP | A/T |
Location: Chr15:78457850 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi7294 | CpG island 7294 | 1617 bp distal | ||||||
Gm36738 | predicted gene, 36738 | 761 bp downstream | ||||||
Rac2 | Rac family small GTPase 2 | 867 bp upstream | ||||||
Rr307919 | regulatory region 307919 | 1151 bp proximal | ||||||
Rr312023 | regulatory region 312023 | 449 bp distal | ||||||
Rr369961 | regulatory region 369961 | 1843 bp downstream | ||||||
Rr404481 | regulatory region 404481 | 696 bp downstream | ||||||
Tssr131969 | transcription start site region 131969 | 1839 bp downstream | ||||||
Tssr135251 | transcription start site region 135251 | 975 bp upstream | ||||||
Tssr135252 | transcription start site region 135252 | 960 bp upstream | ||||||
Tssr135253 | transcription start site region 135253 | 900 bp upstream | ||||||
Tssr135254 | transcription start site region 135254 | 860 bp upstream | ||||||
Tssr135255 | transcription start site region 135255 | 446 bp upstream | ||||||
Tssr135256 | transcription start site region 135256 | 421 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
||
Citing These Resources Funding Information Warranty Disclaimer, Privacy Notice, Licensing, & Copyright Send questions and comments to User Support. |
last database update 12/17/2024 MGI 6.24 |
![]() |
|