rs246799378 SNP Detail

Summary

• ID
  rs246799378
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:56702963 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCCAGAGAT CCCATGGTTG ACCTGATGCA
  GTGTCAGAGA GGCAACCTTC GACCCCTCAG GGGCCCAACA GAGCCCCCAC CCGACTCTCC
  CTCTTGTTTT CTCCTCTTGA AAGAAAAGCC AAAGTTGTAC CATTAAAGCA CCTCCACCCC
  Y
  ACCGCCTCCA GGCCCACCAC GCCCGGTAAT TCCCCGCAAA GTTGCTCCAA GCCTGGATGA
  TTTCCGAGCC AGGTGAGGGT TTGGTAGAGC TGCGCAGCAG GAGGGGAGCG CGGTCACGCT
  GAGGGGGGTG CTGAGCGTGC ACGCCCGTCA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322971056	CHEV_9_56643486	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs246799378					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:56702963 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21799	CpG island 21799	within coordinates
Gm31586	predicted gene, 31586	1313 bp upstream
Lingo1	leucine rich repeat and Ig domain containing 1	within coordinates
Rr679503	regulatory region 679503	within coordinates
Rr679504	regulatory region 679504	449 bp proximal
Rr679505	regulatory region 679505	590 bp proximal
Rr679506	regulatory region 679506	1431 bp proximal
Tssr89733	transcription start site region 89733	87 bp downstream
Tssr89734	transcription start site region 89734	541 bp downstream
Tssr89735	transcription start site region 89735	591 bp downstream
Tssr89736	transcription start site region 89736	1193 bp downstream