rs246811348 SNP Detail

Summary

• ID
  rs246811348
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:132656643 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGGAGGCG ATCTGATAAA
  TAATGAAGCT GCCTGTTTCC TGGGAACGAT TAAGAGTGGC AGAGAGCCAT GATCTCTTTG
  GTGATAGGGA GTCCGGCTTG GGATGCAGCT GGGTTCAGTG GGTCATTTTC TAAATAAAAC
  AAAAAATTAG GATCGTGGCT TCCTAAGAAC AGGGATAGTA AAAAGAGCTT ACAGCTGACT
  T
  TTTAGGGAGC TGGAGAAATG ACCCAGCACT CGAGAGCACT TACTGCTCTT CCACAGGATC
  TGACTTTGGT TCCCAGCACC CAAGTTGTGT GGTTCCCAAT TGGCTGTAAC GCCAACTCCA
  GGAAATACAA AGCATTTGGC CACTGAGCGC ACAGGAATTC ACATACTCAA GCCCACAAAA
  ACACACACAC ACACACACAC                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320509817	CHEV_2_132640459	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs246811348					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:132656643 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12310	CpG island 12310	903 bp proximal
Mcm8	minichromosome maintenance 8 homologous recombination repair factor	1418 bp upstream
Rr397334	regulatory region 397334	1215 bp upstream
Rr565537	regulatory region 565537	1321 bp proximal
Rr565538	regulatory region 565538	1429 bp proximal
Trmt6	tRNA methyltransferase 6	within coordinates
Tssr20335	transcription start site region 20335	1414 bp upstream
Tssr20336	transcription start site region 20336	1425 bp upstream
Tssr20337	transcription start site region 20337	1446 bp upstream
Tssr26490	transcription start site region 26490	1255 bp downstream