rs246825851 SNP Detail

Summary

• ID
  rs246825851
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:44216486 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ACTACTGAG GCTCACTAAG GGTTTGCTAC
  ATCTAGCCTT GTTTCTGAGT GTTAATTAGG GGATGGAGAA GCATCCAACC CCCCCAGGAT
  CCTTACCTGA CATTTCATCA CTAGTCAAAG TACAAAACCA TCCCATCAAC AATTATCAGG
  M
  GAGTATATAC TCTATCGCCA GGCACCAATG AACTCTGAGC CACAATCCAG AAGAAAGGCC
  CAGGTCCTAA ACAAGGACTC ACAGACCAGG ATCTGACGGC TGAACCCCGC AACCAATCCA
  AGGCGCAGGA CCAGGGAGAT CGGGACACGA                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322940620	CHEV_9_44113272	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs246825851					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44216486 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21648	CpG island 21648	32 bp proximal
Hinfp	histone H4 transcription factor	within coordinates
Rr206299	regulatory region 206299	within coordinates
Rr368726	regulatory region 368726	494 bp upstream
Tssr89139	transcription start site region 89139	406 bp downstream