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rs246830422 SNP Detail
Summary
  • ID
    rs246830422
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    ChrX:72536768 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GATCTCCCTG AGACCCTGAA
CGAACTTCAC CTGGACCACA ACAAAATCCA GGCTATTGAG TTGGAGGACC TACTTCGATA
CTCCAAGCTG TACAGGTGGG GTTGAGGCAG CCCTTGGGGG ATGCAGGGAT CCATTAGCAA
ATGGGGCAGG TTATAGGGTG GCACCCAGGT CCCTGTGCTC TATCCCAGAG TCCTCCTCTC
Y
CCCAGCCTCT GACGACCTCT AATTCATTTA CCTTCAGGTT GGGCTTAGGT CACAATCAGA
TTCGGATGAT TGAGAATGGG AGCCTGAGTT TTCTGCCTAC CCTGAGGGAA CTTCACTTGG
ACAACAACAA GCTGTCCCGG GTGCCTGCTG GCCTCCCAGA TCTCAAGCTC CTCCAGGTGA
GAGCTGGTTC TCCAAGACTA                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss403771563 MGP_WTSI_X_70738501 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs246830422 SNP C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss403771563 MGP_WTSI_X_70738501 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: ChrX:72536768 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Bgn biglycan within coordinates
Rr691890 regulatory region 691890 507 bp proximal
Rr691891 regulatory region 691891 615 bp proximal
Tssr5633 transcription start site region 5633 104 bp upstream
Tssr5634 transcription start site region 5634 1535 bp downstream
Tssr5635 transcription start site region 5635 1890 bp downstream
Tssr161214 transcription start site region 161214 1797 bp downstream
Tssr161215 transcription start site region 161215 1158 bp downstream
Tssr161216 transcription start site region 161216 1140 bp downstream
Tssr161217 transcription start site region 161217 1101 bp downstream
Tssr161218 transcription start site region 161218 1088 bp downstream
Tssr161219 transcription start site region 161219 1027 bp downstream
Tssr161220 transcription start site region 161220 424 bp downstream
Tssr161221 transcription start site region 161221 365 bp downstream
Tssr161222 transcription start site region 161222 350 bp downstream
Tssr161223 transcription start site region 161223 180 bp downstream
Tssr161224 transcription start site region 161224 126 bp downstream
Tssr161225 transcription start site region 161225 32 bp upstream
Tssr161226 transcription start site region 161226 74 bp upstream
Tssr161227 transcription start site region 161227 118 bp upstream
Tssr161228 transcription start site region 161228 1436 bp upstream
Tssr161229 transcription start site region 161229 1469 bp upstream
Tssr161230 transcription start site region 161230 1493 bp upstream
Tssr161231 transcription start site region 161231 1510 bp upstream
Tssr161232 transcription start site region 161232 1561 bp upstream
Tssr161233 transcription start site region 161233 1633 bp upstream
Tssr161234 transcription start site region 161234 1653 bp upstream
Tssr161235 transcription start site region 161235 1718 bp upstream
Tssr161236 transcription start site region 161236 1761 bp upstream
Tssr161237 transcription start site region 161237 1815 bp upstream
Tssr161238 transcription start site region 161238 1851 bp upstream
Tssr161239 transcription start site region 161239 1900 bp upstream
Tssr161240 transcription start site region 161240 1914 bp upstream
Tssr161241 transcription start site region 161241 1950 bp upstream
Tssr161242 transcription start site region 161242 1983 bp upstream
Tssr163544 transcription start site region 163544 1726 bp upstream
Tssr163545 transcription start site region 163545 1099 bp upstream
Tssr163546 transcription start site region 163546 1035 bp upstream
Tssr163547 transcription start site region 163547 1456 bp downstream
Tssr163548 transcription start site region 163548 1562 bp downstream
Tssr163549 transcription start site region 163549 1639 bp downstream
Tssr163550 transcription start site region 163550 1694 bp downstream
Tssr163551 transcription start site region 163551 1779 bp downstream
Tssr163552 transcription start site region 163552 1905 bp downstream
Tssr163553 transcription start site region 163553 1991 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory