rs246832539 SNP Detail

Summary

• ID
  rs246832539
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:31148164 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGGTGTTT CGAAATATGA
  CGGGCTAGCT TCACAGAGTT GAATATTCGA GCTATCCTGG ATACGTTGGC TAGGAAGTCC
  CCTCACCCAC CCCCGCCGGC GGTTCGAGGT GGCAGCCGAA AGTGGTTATC TTCCTCCACC
  TCTTACCGTC TCTGGAAAAA TTAAAAAGAA AGAAAGAAAG AAAAAAACAC ACCCGAAAAC
  M
  CCAACCAAAG TGCTTAGTGA ATCAGAATGG GTCACTTATG GAGGCTAAGA GCAGCTGGGG
  CAGCAAGATC TGTCCCCGCG GTGCGCAAAC CGCGGACTCT GGGGCGATGG CGGCCGGGTC
  AGGCCACCCC AGAGCGGCCA GGCGGGGCTG CTCACCGGCA GCTGGCAGGG CGGCCGCGGC
  GGGAGGCCCC ACGGGGGCGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357433247	MGP_WTSI_3_30992937	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs246832539					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357433247	MGP_WTSI_3_30992937	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:31148164 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13048	CpG island 13048	within coordinates
Gm65753	predicted gene, 65753	within coordinates
Gm65762	predicted gene, 65762	14 bp downstream
Rr397631	regulatory region 397631	198 bp downstream
Skil	SKI-like	1095 bp upstream
Tssr28706	transcription start site region 28706	108 bp downstream
Tssr28707	transcription start site region 28707	2 bp upstream
Tssr28708	transcription start site region 28708	651 bp upstream
Tssr28709	transcription start site region 28709	679 bp upstream
Tssr28710	transcription start site region 28710	704 bp upstream
Tssr28711	transcription start site region 28711	922 bp upstream
Tssr28712	transcription start site region 28712	946 bp upstream
Tssr28713	transcription start site region 28713	1037 bp upstream
Tssr28714	transcription start site region 28714	1882 bp upstream
Tssr32911	transcription start site region 32911	1812 bp downstream