rs246834577 SNP Detail

Summary

• ID
  rs246834577
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:9881174 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCCCCATCC GCAGAAATGT
  CTGTTTGAAA TGTCTGTTTG AAACCTGGCG GCTCTAGGGT AGAGGATGCC TGCTGGCCAA
  AGGGGCTATG TCATAGGCGC CAAGGCTAAC TCTGAGAAGG GAGACCTGAG CAGATCTCAG
  GTCTGAGCTA GCTAAGAAAA ACCTCCCACC TTCTTTCCTT AAAATAAAAA AAAAAAAAAA
  M
  AAACAATGTA TTTTTGCTGG TTTAGGTGCA TAAACATACA TCTGGGGAGT GTTAAGAGTC
  TCCTGTCTCG ACCACACAAG GTTGGGTTTC TTTCTTTTTC TCTTCTTTAC ACACCTCAGA
  ACTCCCCTAA ATTTTTCAAG GTGAATGGTT AGGGGGAGGC GGCAACTGGA AACACTCCTA
  CTTAAAAAGA AACTTTGATG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353055991	MGP_WTSI_2_9797990	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	A	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs246834577					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	A	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353055991	MGP_WTSI_2_9797990	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:9881174 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11182	CpG island 11182	1247 bp distal
Cpgi11183	CpG island 11183	613 bp proximal
Cpgi11184	CpG island 11184	1699 bp proximal
Gata3	GATA binding protein 3	Intron
Gm13256	predicted gene 13256	893 bp upstream
Rr551592	regulatory region 551592	403 bp proximal
Tssr16061	transcription start site region 16061	226 bp downstream
Tssr22553	transcription start site region 22553	959 bp upstream
Tssr22554	transcription start site region 22554	1080 bp downstream
Tssr22555	transcription start site region 22555	1473 bp downstream
Tssr22556	transcription start site region 22556	1521 bp downstream
Tssr22557	transcription start site region 22557	1623 bp downstream
Tssr22558	transcription start site region 22558	1792 bp downstream
Tssr22559	transcription start site region 22559	1997 bp downstream