rs246837084 SNP Detail

Summary

• ID
  rs246837084
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:84106211 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAACAAAAA GATTAAAGGA
  GCAGCGGCTG CAGCGGCCGC GGGGCCGGGC AGGGATCCTG GGGTGGCGCG CCCGGGTTCC
  GCGGGGGCTG CGGCGCGCGG AGGGGCCGGA GGGCGGGGGC GGGAGCCAGG CGGCGAGGGG
  AGGGCGGGAG CCTAGGGGAG GGCGCGGGCC GGAGGAGGGG CGGGCCCGCC CGCGCGGAGC
  S
  GAGCGGAGCC AAGCGGCGGG GACTGGGCGC GACCCGGCCC AGCGTAGGCG CAGGAGCGGG
  CGGAGCTGAT CGTGGGCAAT GCTGAGGCTG GCGGCCGCCG GGGCCCGAGC CATCGTGGAC
  ATGTCGTACG CCCGTCACTT CCTGGACTTC CAGGGCTCCG CCATCCCCCG AACCATGCAG
  AAGCTGGTGG TGACCCGGCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401475728	MGP_WTSI_18_84257478	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs246837084					SNP	G	G	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401475728	MGP_WTSI_18_84257478	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:84106211 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10336	CpG island 10336	1688 bp distal
Cpgi10337	CpG island 10337	within coordinates
Gm56504	predicted gene, 56504	1354 bp upstream
Gm58899	predicted gene, 58899	191 bp downstream
Ptgr3	prostaglandin reductase 3	39 bp upstream
Rr353212	regulatory region 353212	within coordinates
Rr405764	regulatory region 405764	693 bp upstream
Tshz1	teashirt zinc finger family member 1	380 bp upstream
Tssr152202	transcription start site region 152202	399 bp downstream
Tssr152203	transcription start site region 152203	within coordinates
Tssr152204	transcription start site region 152204	100 bp upstream
Tssr152205	transcription start site region 152205	132 bp upstream
Tssr152206	transcription start site region 152206	594 bp upstream
Tssr154121	transcription start site region 154121	1817 bp upstream
Tssr154122	transcription start site region 154122	1683 bp upstream
Tssr154123	transcription start site region 154123	1646 bp upstream
Tssr154124	transcription start site region 154124	1595 bp upstream
Tssr154125	transcription start site region 154125	1328 bp upstream
Tssr154126	transcription start site region 154126	370 bp upstream