rs246849962 SNP Detail

Summary

• ID
  rs246849962
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:74544248 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGCCAGTA TGCAACACTA
  TTCTTTTGAA TATTCACCCA AATATTAACA TGACAAATGA CAAACATCAT ACAAACACAC
  TAGAGCCTAT CTGTCTGGCC CAGAAGCCTC CTCTAATACT TAACACAATA AACCAAAATG
  CCCCCTTAAC ATTCCCTCTT AGATTAGTTC TTTCAACTAT AGACTCATCA GGTACTGTTA
  R
  CTCGCCAAAG GAATATCTGA AAAACACTAC AGTACAACTC TCCAACGACA CGGAACTTTA
  TTACCTTTTT ATTTTTCTCC AGATTTTGAT TTAAAATTGG TTCAATAGAC ACCGTCAGTG
  TCCTGGCTAG ATATGGGTAG CAACCAAAGG CACGACAAAA ATTACACTCC CTTTCAGCGA
  GTAATGTCTA AGAGGAGTAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss350125601	MGP_WTSI_1_74551663	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs246849962					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350125601	MGP_WTSI_1_74551663	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:74544248 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cnot9	CCR4-NOT transcription complex, subunit 9			969 bp upstream
Cpgi385	CpG island 385			222 bp proximal
Gm37733	predicted gene, 37733			1788 bp upstream
Rr396106	regulatory region 396106			686 bp upstream
Rr413210	regulatory region 413210			84 bp proximal
Rr413211	regulatory region 413211			704 bp proximal
Rr413212	regulatory region 413212			980 bp proximal
Rr413213	regulatory region 413213			1555 bp proximal
Tssr7425	transcription start site region 7425			934 bp upstream
Tssr7426	transcription start site region 7426			955 bp upstream
Tssr7427	transcription start site region 7427			1022 bp upstream
Tssr7428	transcription start site region 7428			1220 bp upstream
Tssr7429	transcription start site region 7429			1289 bp upstream
Tssr7430	transcription start site region 7430			1613 bp upstream
Tssr12315	transcription start site region 12315			591 bp downstream
Tssr12316	transcription start site region 12316			698 bp downstream
Usp37	ubiquitin specific peptidase 37			Intron
				Noncoding-Transcript-Variant