rs246853105 SNP Detail

Summary

• ID
  rs246853105
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:34154085 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTCTGCTCC CACCCCCGAG
  ATCACATGGT GACCCTCGGC AGCCAATGCA GTGGACGCTA GGACCCTGCG GGACCCCGGG
  CGCCGCGACT GCACCGGCGC CGCTGCATTA TAAATACTTC TCCAAAATGC GGCGCAGCTC
  CCTGCGCGCG CCCCGGCCGC CCGCCGCCTC CGCCCTGCGC CCCTGAGCCG CTGCCGCCGC
  Y
  GCTGCCGCCG CGGGTCCGAG GGCGCCGCGC CCTTGCCCTG GGCTCGGGCT CTGCCCGCTG
  CCGCCGGCTC GCGTCCTCGC GCTGCGCCGC CCGGCCGGGT GCATGCATTG TGGGCCTCCC
  GACATGGTCT GCGAGACGAA GATCGTGGCT ACGGAGGACC ATGAGGCACT GCCGGGGGCC
  AAGAAGGACG CGCTGCTCGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ
ss364490766	MGP_WTSI_5_34339390	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ
rs246853105					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss364490766	MGP_WTSI_5_34339390	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:34154085 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15746	CpG island 15746	within coordinates
Nat8l	N-acetyltransferase 8-like	within coordinates
Rr609648	regulatory region 609648	1888 bp distal
Rr609649	regulatory region 609649	747 bp distal
Tssr1458	transcription start site region 1458	42 bp upstream
Tssr45846	transcription start site region 45846	711 bp downstream
Tssr45847	transcription start site region 45847	680 bp downstream
Tssr45848	transcription start site region 45848	630 bp downstream
Tssr45849	transcription start site region 45849	604 bp downstream
Tssr45850	transcription start site region 45850	317 bp downstream
Tssr45851	transcription start site region 45851	147 bp downstream
Tssr45852	transcription start site region 45852	109 bp downstream
Tssr45853	transcription start site region 45853	51 bp downstream
Tssr45854	transcription start site region 45854	12 bp downstream
Tssr45855	transcription start site region 45855	within coordinates
Tssr45856	transcription start site region 45856	7 bp upstream
Tssr45857	transcription start site region 45857	29 bp upstream
Tssr50625	transcription start site region 50625	193 bp upstream
Tssr50626	transcription start site region 50626	840 bp downstream