rs246859343 SNP Detail

Summary

• ID
  rs246859343
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:101898495 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAGATAGA AACAAAATGG
  GGAGATATGT GTGTGGTAGT CAGAGGCTGA ACAACAGGCA GGGCAGGGTA AATGCGAGAT
  CAGGGCCTGG GTACATCTAT GTGGTTGGGG GAAGAGCCGG AAGGAGGCGA ATGTGGTCGA
  CACTATGGCG AATGTGGAAG ACAGTATGGG GAGTTCAGGT GAGGGAGAAG ACGTTAAGAG
  Y
  TCTCAATCAT TACCGAAAGC CAGTACTCCA GCTGCCTCTC AAAGTCATGG AAGTTGTCAG
  TGACTATCGG TATAGTGGCC CTTTCCTTCC TCAGTTTATC CTCAAAATAA AAAAGGCCAG
  ATTGAGTCTG ATAGACACAA CAGACGTGTT CACTAAATAC CCGCTGTTGT ATGGGACAGG
  AATAAAGAGG TTGGCTCAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322353648	CHEV_7_109397802	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs246859343					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:101898495 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19524	CpG island 19524	354 bp proximal
Rhog	ras homolog family member G	within coordinates
Rr652561	regulatory region 652561	1757 bp distal
Rr652562	regulatory region 652562	within coordinates
Rr652563	regulatory region 652563	790 bp proximal
Rr652564	regulatory region 652564	1633 bp proximal
Tssr2354	transcription start site region 2354	971 bp upstream
Tssr68327	transcription start site region 68327	1530 bp downstream
Tssr68328	transcription start site region 68328	332 bp upstream
Tssr68329	transcription start site region 68329	414 bp upstream
Tssr68330	transcription start site region 68330	932 bp upstream
Tssr73939	transcription start site region 73939	74 bp downstream
Tssr73940	transcription start site region 73940	124 bp downstream
Tssr73941	transcription start site region 73941	166 bp downstream
Tssr73942	transcription start site region 73942	254 bp downstream
Tssr73943	transcription start site region 73943	787 bp downstream
Tssr73944	transcription start site region 73944	798 bp downstream
Tssr73945	transcription start site region 73945	839 bp downstream
Tssr73946	transcription start site region 73946	1035 bp downstream
Tssr73947	transcription start site region 73947	1178 bp downstream
Tssr73948	transcription start site region 73948	1203 bp downstream
Tssr73949	transcription start site region 73949	1239 bp downstream
Tssr73950	transcription start site region 73950	1288 bp downstream