rs246865655 SNP Detail

Summary

• ID
  rs246865655
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:95240463 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CAGATACCT GTCTTGTGAC GTTCTGCATT
  TTAAGATTGG AACAGGCTGT CTAGAACATG TCTTCAGCTG TGATTTTAGA GGTCCTCTAT
  AGCTACTGCA GTGTCTTCAG GGTAATCCTA ATAGTTTCCA GGACATGGAC TAAATTGCAG
  Y
  TCCAGACCCT TAAACAGCTG ACTCTTGACA GATGTCTGAG AAAGCCTTTT AAAAAATCTG
  TTTATAATAG ACTGAAAGAA AGCTCAAGAA AGAACTAATC ATATTTATAC ACAACCCATG
  CTCCAATGCC CCAGGCAGGT GTCTGGTTTT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319848304	CHEV_1_97209315	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs246865655					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:95240463 () rs orientation: forward

Symbol	Name	Function Class
Cpgi614	CpG island 614	690 bp proximal
Fam174a	family with sequence similarity 174, member A	890 bp upstream
Rr29863	regulatory region 29863	337 bp proximal
Rr396183	regulatory region 396183	623 bp upstream
Tssr8214	transcription start site region 8214	869 bp upstream
Tssr8215	transcription start site region 8215	940 bp upstream
Tssr8216	transcription start site region 8216	1349 bp upstream
Tssr8217	transcription start site region 8217	1368 bp upstream
Tssr8218	transcription start site region 8218	1386 bp upstream
Tssr8219	transcription start site region 8219	1412 bp upstream
Tssr13058	transcription start site region 13058	1317 bp downstream