rs246867676 SNP Detail

Summary

• ID
  rs246867676
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:4703992 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATTCTGAG GGTGTCTAAA
  TGTAGACAGA AGATGAAGGG ACTGAGGCAT TCCGGTTTCA GTATCCAGCT GGGCAGCCGA
  GGTTAGCGTC GTGTGAAGGA GATAACCCCC TTAGCCGGAG CCTCTTGGTT CGACCCACTG
  TGGCTACTCA CGTGAGAGGT GGTGGTGGTG GTGGTGGTGG TGGTGGTGGT GGTGGCAAGC
  Y
  TGGGAAGCGT AGTACGCAGG CGCATTGGCT GCCTGGCCTG GACTCCATTT CCCCTGGAAC
  TGCGGGGCGG GGGCGGGGGC GGGGCGCCGG GCCTAGGCCG GGGCGGCCGG GGGCGGGGGC
  TGTGGAGAGG TGCCGCGGCG GCGGCGGCGG TGGCGGCGGT GGGTACGCGT TGGTGCGGCC
  TGTTTTGGGC CATGTCCGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395254926	MGP_WTSI_16_4886128	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs246867676					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395254926	MGP_WTSI_16_4886128	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:4703992 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7923	CpG island 7923	within coordinates
Gm60219	predicted gene, 60219	within coordinates
Gm60232	predicted gene, 60232	652 bp downstream
Mgrn1	mahogunin, ring finger 1	121 bp upstream
Rr510952	regulatory region 510952	within coordinates
Rr510953	regulatory region 510953	607 bp proximal
Tssr136882	transcription start site region 136882	7 bp upstream
Tssr136883	transcription start site region 136883	72 bp upstream
Tssr136884	transcription start site region 136884	80 bp upstream
Tssr136885	transcription start site region 136885	111 bp upstream
Tssr136886	transcription start site region 136886	143 bp upstream
Tssr136887	transcription start site region 136887	174 bp upstream