rs246877199 SNP Detail

Summary

• ID
  rs246877199
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:85122709 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CGTGTCTAGA ATCCCCTTGC ACCTGCTCTT CCGTTCATCT
  TTACTCAAGC TGCAGAAGTC TACTGGCTTC CTTTACACCA GGCAGTAGAG GGGGGGGGGG
  S
  GGGAGGGGAA CTGTATTTCT AGGAACCCAA TCCAGGTCCT GTTGATTCTT TCCACATTCT
  CCGTAATTAC TCTCCTCTTG GCGGCTCATC ACTTTGATC                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321193465	CHEV_4_84850376	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs246877199					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:85122709 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14412	CpG island 14412	608 bp proximal
Rr594659	regulatory region 594659	416 bp proximal
Rr594660	regulatory region 594660	1074 bp proximal
Rr594661	regulatory region 594661	1189 bp proximal
Sh3gl2	SH3-domain GRB2-like 2	954 bp upstream
Tssr37705	transcription start site region 37705	648 bp upstream
Tssr37706	transcription start site region 37706	664 bp upstream
Tssr37707	transcription start site region 37707	679 bp upstream
Tssr37708	transcription start site region 37708	737 bp upstream
Tssr37709	transcription start site region 37709	945 bp upstream
Tssr37710	transcription start site region 37710	1031 bp upstream
Tssr37711	transcription start site region 37711	1046 bp upstream
Tssr37712	transcription start site region 37712	1203 bp upstream