rs246878487 SNP Detail

Summary

• ID
  rs246878487
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:52295729 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTCATGAA ACCAGTAGAA
  GTCTAGGAGG CGACATGGCC CTTGCCTGAC CCAGTGCAGT CAGTAGTGTG GGATATAATA
  AGACAATAAA AAAGGAAATC AAAGGCATTA AGTAACGTGG ATTGACGTAC ATCCAGTAGG
  AAGGAAAGCT AGAGCTGAGT TGTTTGACAA GACTGCTTCC AAGCAGGAGT TCACAATACA
  K
  CCACACTTCC TTGTTCCTGC AGTTCCTGTT ACTCAATTTC TGGTGTGATT CAAGTCCTGT
  GTCATATGCT CTTTGAGGGA AAATTATTAG CAAGGAAAAG AAGCCAACTT AAGCCAAGTT
  TTGACCTAGA ACTAAATGGG GATTTAAGGG GCATTTTTTT TTTTTAACTG AATAGACTTC
  AAGGATTCTG TGTGCTTCTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323303513	CHEV_10_52139439	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs246878487					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:52295729 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1536	CpG island 1536	1235 bp distal
Nus1	NUS1 dehydrodolichyl diphosphate synthase subunit	within coordinates
Rr224795	regulatory region 224795	within coordinates
Tssr93304	transcription start site region 93304	1921 bp downstream
Tssr93305	transcription start site region 93305	1715 bp downstream
Tssr93306	transcription start site region 93306	1591 bp downstream
Tssr97579	transcription start site region 97579	114 bp upstream