rs246879652 SNP Detail

Summary

• ID
  rs246879652
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:189075475 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCTT TTTTTTTTCT TTTTTGTTTT
  Y
  ACCAACACGC CATTGTACTC ACTCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320190725	CHEV_1_191167157	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs246879652					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:189075475 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
A430027H14Rik	RIKEN cDNA A430027H14 gene			within coordinates
Cpgi1195	CpG island 1195			within coordinates
Kcnk2	potassium channel, subfamily K, member 2			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr425779	regulatory region 425779			1437 bp distal
Rr425780	regulatory region 425780			134 bp distal
Rr425781	regulatory region 425781			within coordinates
Rr425782	regulatory region 425782			67 bp proximal
Rr425783	regulatory region 425783			164 bp proximal
Rr425784	regulatory region 425784			419 bp proximal
Rr425785	regulatory region 425785			677 bp proximal
Rr425786	regulatory region 425786			717 bp proximal
Rr425787	regulatory region 425787			904 bp proximal
Tssr15712	transcription start site region 15712			64 bp downstream
Tssr15713	transcription start site region 15713			429 bp downstream