rs246881869 SNP Detail

Summary

• ID
  rs246881869
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:154720338 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGGACGGG AGGGCGCGCT
  GGGCGGCTGC GAGACACGGT GGCCATAGTG CGGACGGCAG GAGCCGGCGG GCTGCGGTGG
  GGACCAGCCC GCTGCTGGCT GAGCGCACAG CCCCAGGCAC GGCTCGAGGC GGCGCGAAAG
  AGAAAGTAAG CCCCGGGCCC GGGTAGCCTC GCCGGGACAT TGGTCCCTCT GGGGCTCGCG
  R
  GTGCCGGGGA CAGCATGTGC GAGAGGGTCG GAGCGAGGCC AAGCGAGGCA GGGCGGCGGG
  TAGCAAAGCG GCCAGTGAGG ACCCCGCTGC CGGAGGCGCC GGCACCGGGC GGCCGGAGCG
  AATCGCGAGG ATCACAGAGG AGCGCCGGCC ACCACGCGGG GCACCACTTG GGAATAAACT
  TCAAGAGCAC AGTTTCGAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363773539	MGP_WTSI_4_154009990	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	A	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs246881869					SNP	G	G	G	G	G	G	A	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363773539	MGP_WTSI_4_154009990	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:154720338 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
5930403L14Rik	RIKEN cDNA 5930403L14 gene			within coordinates
Gm57100	predicted gene, 57100			403 bp upstream
Prdm16	PR domain containing 16			Intron
				Noncoding-Transcript-Variant
Prdm16os	Prdm16 opposite strand transcript			1699 bp upstream
Rr606231	regulatory region 606231			1088 bp distal
Rr606232	regulatory region 606232			202 bp distal
Rr606233	regulatory region 606233			within coordinates
Rr606234	regulatory region 606234			975 bp proximal
Tssr1394	transcription start site region 1394			1029 bp upstream
Tssr40591	transcription start site region 40591			1260 bp upstream
Tssr40592	transcription start site region 40592			1665 bp upstream
Tssr40593	transcription start site region 40593			1688 bp upstream
Tssr44877	transcription start site region 44877			238 bp downstream
Tssr44878	transcription start site region 44878			323 bp downstream
Tssr44879	transcription start site region 44879			344 bp downstream
Tssr44880	transcription start site region 44880			419 bp downstream
Tssr44881	transcription start site region 44881			892 bp downstream
Tssr44882	transcription start site region 44882			928 bp downstream
Tssr44883	transcription start site region 44883			950 bp downstream
Tssr44884	transcription start site region 44884			1082 bp downstream