rs246887911 SNP Detail

Summary

• ID
  rs246887911
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:133327395 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGTGAAGC ACTCCCTTGT
  TTTCACAGTG ACCTCCAGTG ACCCTTCTGA CCTCATGGAA GATAATCAAA TACATTTGCT
  ACTCCAGCTT CCCGATGCAG CAGTCCATGG CCCTGTCCCC AGGTGTGCCA CACACCTTCC
  TCCCTGCCCC CCCCCCCCCC GAGGAGGCTC ACTTATTTGA GAGCAAGGCT TATTTCCCGA
  R
  CTCATCTTCC ATCAGGCTTT GTTTAAAAAA AAAAAAAAAA AAAAAAGCCT GATGGAAGAT
  GAGCTCGGGA AATAATTTTA TTTGCTGAAC TTGTCTTATC GTTTTGTCCA CTTCAGAGCA
  GGGCTGGGTC TGGAGGCGGT GAGTACTTTG TGTCTTCCAT AGAAAGGGAA AGTTAGTCAA
  CAGGAGCTGC CCTCTCCACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss404648026	MGP_WTSI_X_130961185	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs246887911					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss404648026	MGP_WTSI_X_130961185	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:133327395 () rs orientation: forward

Symbol	Name	Function Class
Drp2	dystrophin related protein 2	within coordinates
Rr395676	regulatory region 395676	within coordinates
Rr395677	regulatory region 395677	529 bp upstream
Rr693566	regulatory region 693566	834 bp proximal
Tssr161995	transcription start site region 161995	1410 bp downstream
Tssr161996	transcription start site region 161996	373 bp upstream
Tssr161997	transcription start site region 161997	389 bp upstream
Tssr161998	transcription start site region 161998	410 bp upstream