rs246902219 SNP Detail

Summary

• ID
  rs246902219
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:129205577 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTCACTAA ATTGCACAGG
  ATGGCTTTGT GCTTTCTCTG TAGTTAGGCA GTCCTTCAAC AGCCATTCTC CTGACTCAGC
  TTCTCAGGTA TGGATAGCAG CCAGTGAACC AGGCTTCGCT TGCAATCAAT CTTTTTTTGT
  TTGTTTTGTT TTTTTCTGTT TTTGTTTTTT GTTTGTTTGT TTGTTTGTTT TCGAGACAGG
  K
  TTTCTCTGTG TAGCCTTGAC TGTCCTGGAA CTCACTTTGT AGACCAGACT GGCCTCAAAC
  TCAGAGATCC GCCTGCCTCT GCCTCTGCCT CTGCCTCTGC CTCTGCCTCT GCCTCTGCCT
  CTGCCTCTGC CTCTGCCTCT GCCTCTGCCT CTGCCTCTGC CTTCCAAGTG CTGGGATTAA
  AGGTGTGTGC CACCATGCTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370046199	MGP_WTSI_6_129178632	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	G	T	T	T	T	T	G	T	T	T	G	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs246902219					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	G	T	T	T	T	T	G	T	T	T	G	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370046199	MGP_WTSI_6_129178632	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:129205577 () rs orientation: forward

Symbol	Name	Function Class
Gm38906	predicted gene, 38906	851 bp downstream
Gm47861	predicted gene, 47861	within coordinates
Rr399972	regulatory region 399972	713 bp upstream
Rr639406	regulatory region 639406	374 bp proximal
Tssr59119	transcription start site region 59119	762 bp upstream
Tssr59120	transcription start site region 59120	781 bp upstream
Tssr59121	transcription start site region 59121	1888 bp upstream
Tssr59122	transcription start site region 59122	1922 bp upstream
Tssr59123	transcription start site region 59123	1981 bp upstream
Tssr63549	transcription start site region 63549	473 bp downstream
Tssr63550	transcription start site region 63550	623 bp downstream
Tssr63551	transcription start site region 63551	1648 bp downstream