rs246906094 SNP Detail

Summary

• ID
  rs246906094
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:15199094 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGTGCCAGG TTTTGGAACC
  TTGGAGAATT GCTGCAGTGC AGAGAACTCA GTTGGGATCA GGCAAGTCAC TTAACTACCT
  ACAGTAACCT TGACTTCTAG AAGCCCTAAG AACCCGGGGT CCTTCCTGGC TCCAGGCTGC
  ATTTCGAACT TCGCCTAGAG GATCAAGCTC CATGCTTGGG CCCACGAGGA AGCCGCTCTC
  Y
  GGGTCTCCCC ACTTTTGCAG CACAGCTAGT ACAATACTCC CCCAACTCGC TCCGTGCAGA
  CACCGGGCTC CCCTCCCTCT AGGGGAGCTG CTTCCAATAG CTAGCAGTTT GCCGGAGGCG
  GTGTACTGGG TTGGACGCTC CGGGAAACAA AGCAACCAAA AACAGCTTCC AGTTGACGTC
  AACGTATTTC CAGAAAAGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325532719	CHEV_18_15224546	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs246906094					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:15199094 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9734	CpG island 9734	867 bp distal
Gm58434	predicted gene, 58434	within coordinates
Kctd1	potassium channel tetramerisation domain containing 1	within coordinates
Rr393314	regulatory region 393314	within coordinates
Tssr152512	transcription start site region 152512	1923 bp upstream
Tssr152513	transcription start site region 152513	1897 bp upstream
Tssr152514	transcription start site region 152514	1882 bp upstream
Tssr152515	transcription start site region 152515	1811 bp upstream
Tssr152516	transcription start site region 152516	1702 bp upstream
Tssr152517	transcription start site region 152517	1681 bp upstream
Tssr152518	transcription start site region 152518	1663 bp upstream
Tssr152519	transcription start site region 152519	1594 bp upstream
Tssr152520	transcription start site region 152520	1561 bp upstream