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rs246918239 SNP Detail
Summary
  • ID
    rs246918239
  • Variation Type
    SNP
  • Alleles
    A/C
Genome Location and Flanking Sequence
  • Location
    Chr12:8058827 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AGCGAGCCTC TTCAGAAACT
CAGTAATGTG CTACAGCGAA TTGAGATAAA AGATTACTAT GAGAAATTGG TTGGGTTTAT
TGATGATACT GTTGAGTGGC TTAAAGCATT GTCTTTCAAA AATACCATTG AAGAACTAAA
TAGATTGACT GACATGTTGG TGAAGAAGTT GAAAGCATTT GATTATCACC AGTTTGTAGA
M
AAAACCAACA GCAAAATCCG TGAGATGACT CAGAGAATCA ATGCTGAAAT CCAAGCTCTC
AAACTTCCAC AAAAAATGGA AGCATTAAAA CTGTTGGTAG AAGACTTCAA AACCACAGTC
TCCAATTCCC TGGAAAGACT CAAGGACACC AAAGTAACTG TGGTCATTGA TTGGCTGCAG
GATATTTTGA CTCAAATGAA                                            

M = A/C

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss385064688 MGP_WTSI_12_8015633 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs246918239 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss385064688 MGP_WTSI_12_8015633 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr12:8058827 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Apob apolipoprotein B within coordinates
Tssr3782 transcription start site region 3782 115 bp downstream
Tssr112634 transcription start site region 112634 1946 bp downstream
Tssr112635 transcription start site region 112635 1860 bp downstream
Tssr112636 transcription start site region 112636 1395 bp downstream
Tssr112637 transcription start site region 112637 1315 bp downstream
Tssr112638 transcription start site region 112638 1250 bp downstream
Tssr112639 transcription start site region 112639 1008 bp downstream
Tssr112640 transcription start site region 112640 966 bp downstream
Tssr112641 transcription start site region 112641 914 bp downstream
Tssr112642 transcription start site region 112642 840 bp downstream
Tssr112643 transcription start site region 112643 751 bp downstream
Tssr112644 transcription start site region 112644 537 bp downstream
Tssr112645 transcription start site region 112645 435 bp downstream
Tssr112646 transcription start site region 112646 406 bp downstream
Tssr112647 transcription start site region 112647 234 bp downstream
Tssr112648 transcription start site region 112648 212 bp downstream
Tssr112649 transcription start site region 112649 259 bp upstream
Tssr112650 transcription start site region 112650 318 bp upstream
Tssr112651 transcription start site region 112651 389 bp upstream
Tssr112652 transcription start site region 112652 413 bp upstream
Tssr112653 transcription start site region 112653 440 bp upstream
Tssr112654 transcription start site region 112654 456 bp upstream
Tssr112655 transcription start site region 112655 474 bp upstream
Tssr112656 transcription start site region 112656 496 bp upstream
Tssr112657 transcription start site region 112657 511 bp upstream
Tssr112658 transcription start site region 112658 544 bp upstream
Tssr112659 transcription start site region 112659 597 bp upstream
Tssr112660 transcription start site region 112660 749 bp upstream
Tssr112661 transcription start site region 112661 980 bp upstream
Tssr112662 transcription start site region 112662 1224 bp upstream
Tssr112663 transcription start site region 112663 1459 bp upstream
Tssr112664 transcription start site region 112664 1484 bp upstream
Tssr112665 transcription start site region 112665 1649 bp upstream
Tssr112666 transcription start site region 112666 1658 bp upstream
Tssr112667 transcription start site region 112667 1705 bp upstream
Tssr112668 transcription start site region 112668 1843 bp upstream
Tssr112669 transcription start site region 112669 1928 bp upstream
Tssr112670 transcription start site region 112670 1981 bp upstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory