rs246921800 SNP Detail

Summary

• ID
  rs246921800
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:32249233 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGAAAAAAC GAAAAAAAAA
  AAAACAAAAA ACAAAAAACA AAAAACCAAA AAACCAAAAA AAACAAAACC CACTAGAGTT
  CAGGTCCCAG CACCCAGGTA TTCACAAAGG CCCGTTAACT CTAGCTCCAA GACATGTCAC
  CCCATTTATG GCCTCCGTGG ACACACAAAA TCTTAGAAGT GTGTTGTGTG TGTGTGTGTG
  K
  GGGGGGGGGG GACTCGGCCA AACAAAATCC CCCAAAAGCT CACCGTAGGA AGTTCGTTCC
  CTAGACTACA GCCTCCTTGT CTGTGCATTT TTGCCCTCGC CTCTACTCCT GCTCCACTAC
  TTCCCGGGTC GATTTCTAGG CTCGTTTTCT GATGAGTCAA CCCAGGTCCG AATAACTGGC
  AGACAGAGGA TGAGCTCAGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	QSi3/Ianm	QSi5/Ianm	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J
ss395858328	MGP_WTSI_16_32430501	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	QSi3/Ianm	QSi5/Ianm	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J
rs246921800					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395858328	MGP_WTSI_16_32430501	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:32249233 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8190	CpG island 8190	6 bp proximal
Dynlt2b	dynein light chain Tctex-type 2B	1316 bp downstream
Gm53948	predicted gene, 53948	1151 bp upstream
Pcyt1a	phosphate cytidylyltransferase 1, choline, alpha isoform	506 bp upstream
Rr404779	regulatory region 404779	340 bp upstream
Rr514694	regulatory region 514694	1008 bp distal
Rr514695	regulatory region 514695	within coordinates
Rr514696	regulatory region 514696	254 bp proximal
Rr514697	regulatory region 514697	313 bp proximal
Rr514698	regulatory region 514698	845 bp proximal
Tssr137979	transcription start site region 137979	192 bp upstream
Tssr137980	transcription start site region 137980	480 bp upstream
Tssr137981	transcription start site region 137981	570 bp upstream
Tssr137982	transcription start site region 137982	608 bp upstream
Tssr137983	transcription start site region 137983	628 bp upstream
Tssr137984	transcription start site region 137984	677 bp upstream
Tssr137985	transcription start site region 137985	810 bp upstream
Tssr137986	transcription start site region 137986	875 bp upstream
Tssr140804	transcription start site region 140804	663 bp downstream