rs246922256 SNP Detail

Summary

• ID
  rs246922256
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:143119703 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCAGGGTGA GATGTGGTGT
  GGTCCAGTAG TTCAATCTGT AGAGTAATGA AAGAAACAAG TATGTATTTT CTGTTTCTTA
  GTGAAAGTAT CCAGGCCTTG AGAAGTACAG ATTGGAATAC TGTGCTGTTG TTGATTAGAG
  CAAATACGGT TCTCCTGTGG CTACTTTTTT TTTTTTTTTT TTTTTTTTTG CTTTTCATTG
  Y
  CAGTTTGTAA TCGGGGAGGG GTACATTAAT GTGAGGTTAA GGAAAATATT GAAATTAATC
  TCAGTCCTTG GTAAGCATGC CCTACTCCTT TGTTTATGCA TAAGAAAACG ATTTATAGCT
  TGTACCCTTA CAAGTTGAAA GTTGAGGTTG AAAGTCCAGG ATAGAGTCAT TAGCCCTTAA
  TCTCAATAAA GATGACCATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss404807860	MGP_WTSI_X_140771250	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs246922256					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss404807860	MGP_WTSI_X_140771250	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:143119703 () rs orientation: forward

Symbol	Name	Function Class
Alg13	asparagine-linked glycosylation 13	within coordinates
Rr395738	regulatory region 395738	118 bp downstream
Rr395739	regulatory region 395739	917 bp upstream
Rr694213	regulatory region 694213	1621 bp proximal
Tssr162278	transcription start site region 162278	876 bp downstream
Tssr162279	transcription start site region 162279	780 bp downstream
Tssr162280	transcription start site region 162280	708 bp downstream
Tssr162281	transcription start site region 162281	684 bp downstream
Tssr162282	transcription start site region 162282	653 bp downstream
Tssr162283	transcription start site region 162283	631 bp downstream
Tssr162284	transcription start site region 162284	615 bp downstream
Tssr162285	transcription start site region 162285	599 bp downstream
Tssr162286	transcription start site region 162286	569 bp downstream
Tssr162287	transcription start site region 162287	557 bp downstream
Tssr162288	transcription start site region 162288	538 bp downstream
Tssr162289	transcription start site region 162289	510 bp downstream
Tssr162290	transcription start site region 162290	478 bp downstream
Tssr162291	transcription start site region 162291	10 bp downstream