rs246925268 SNP Detail

Summary

• ID
  rs246925268
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:89096691 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTCAGGCA AGTTATTTAA
  CCTTAATTGC CTGACCTGTA AAACATTGTG AACATGAATG TTTGTAACAC TGAGTAAGCC
  TTCAATAAAT TTCCTTTTCT CCCTTCTCTC TTTGGAGTAT TCTGTTATTG TTAAAGTAGT
  GTTGGGATTT ATTAAAGATG TTTGAAATGG ACTGGAGAGA TGGCTCAGTG GTTAAGAGCA
  S
  TGACTGCTCT TCCAGAGGTC CTGAGTTCAA TTTCCAGCAA CCACATGGTG GCTCACAACC
  ATCTGTAATG AGATCCGATG CCCTCTTCTT GTGTGTCTGA AGACAGCTAC AGTGTACTTA
  CATAAATTGT CTTCACCTCC TCCCTACCTT CTCCTCTTCC TTGTTTTGTC TTGTTTTCCT
  CCCTGAGACA GGTTTTCTCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358808229	MGP_WTSI_3_88993306	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	C	C	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs246925268					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	C	C	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358808229	MGP_WTSI_3_88993306	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:89096691 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13408	CpG island 13408	1777 bp distal
Entrep3	endosomal transmembrane epsin interactor 3	89 bp downstream
Rr367465	regulatory region 367465	1120 bp upstream
Rr579970	regulatory region 579970	393 bp distal
Rr579971	regulatory region 579971	978 bp proximal
Tssr30054	transcription start site region 30054	1975 bp downstream
Tssr30055	transcription start site region 30055	1927 bp downstream
Tssr30056	transcription start site region 30056	1896 bp downstream
Tssr30057	transcription start site region 30057	1554 bp downstream
Tssr30058	transcription start site region 30058	1488 bp downstream
Tssr30059	transcription start site region 30059	1419 bp downstream
Tssr30060	transcription start site region 30060	1387 bp downstream
Tssr30061	transcription start site region 30061	1056 bp downstream
Tssr30062	transcription start site region 30062	1018 bp downstream
Tssr30063	transcription start site region 30063	974 bp downstream
Tssr34094	transcription start site region 34094	747 bp upstream