rs246931460 SNP Detail

Summary

• ID
  rs246931460
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:11508196 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAACAGGCCA ACAGTGTAAC
  CCGTCCAGTT GTACCAGAAC ATCTCAAGAG GAATGGGGAC TTGGTAATGT AACAGAAATA
  TAGAGTGCCC TTAGCCAGAT GTCTATGGAT CCAGTACAGG ATTATCCTGA TCCTACTTTT
  CTGTACCCTC CCAGTCTCCT ACTCTCAAAG GACACCTACA GCAACTCCTG CCAAAGTTCC
  Y
  TTCCCATCTC AGTGTCTTGA ATAGCCTGAT ATAGCTGTGA TTCCTAAAAG GGATGTGAGT
  ATGCTTTGGA AACACGCTGC TGGTTTTGCC CCTCTGGACT CTCAGGATCC ATATCAGCAC
  CAGGTCTATC CCAGAGATTT TGGAGGATAA CTCACAGGGG ACTGACAGAA TCCCTCTAGC
  AAAAGCCATG GTCATGGAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382421356	MGP_WTSI_11_11458199	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs246931460					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382421356	MGP_WTSI_11_11458199	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:11508196 () rs orientation: forward

Symbol	Name	Function Class
Gm11998	predicted gene 11998	within coordinates
Gm29945	predicted gene, 29945	268 bp upstream
Rr402417	regulatory region 402417	711 bp downstream
Rr442717	regulatory region 442717	768 bp distal
Rr442718	regulatory region 442718	864 bp distal
Rr442719	regulatory region 442719	354 bp distal
Rr442720	regulatory region 442720	241 bp distal
Rr442721	regulatory region 442721	within coordinates
Rr442722	regulatory region 442722	356 bp proximal
Tssr100349	transcription start site region 100349	798 bp downstream
Tssr100350	transcription start site region 100350	765 bp downstream
Tssr100351	transcription start site region 100351	253 bp downstream
Tssr100352	transcription start site region 100352	170 bp downstream